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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044548 ID=TCONS_00044548|Name=TCONS_00044548|organism=Clytia hemisphaerica|type=transcript|length=1556bp
AAAAATGGTAGTAGTACGCTCTCTAAAAGACATCATCTCTATAAAGATTA
AACCAAGACATGATTCACCTTGCGATCAATTCAGTCGTATATTTATGACC
AAAATGCTACTCATAGCATCTGTCGTAATGGGGTTCCAATATTTCTCGGA
CAAAATCAATTGCCTTCAAGCTCACAAATCTGACGTTTCTAAAGACTTTG
TTCATGCTGCTTGTTGGATATCCGGGCTCTATGTTTACAAAGAAAGAAAG
CTGGTTGAAAATCAAATATATCCTGGAATTCCGTCAAATTTAAAGATGGA
CGGTTTCACATCTGAGAGTTACCATCCTTGTGATTCAACATCGGCATCAA
ATATGGGAGTTGGTATGTGCACCAAATTgaccagagaatattatctcCAT
TATCAATGGATGCCGTTCTATATTGGTGCTTTAGCTATTTTTTATTATCT
CCCATATGTCTTGTTCAGGATCATCAATGTTGATCTTATCTCCTTAAAGT
CAGTTTTGGAATCGGTTACCGGTGATGCAGACCATATCGTCCGAAATTAC
TTCAACTACAAAATCAATTCCATTGGTAAATTGCGCATGCGTATCTTTTT
GAATGTCATTGTGAAATGTGCATACGTTATTGCTAACCTTTTCGGTTTCT
TTTTCACTGATCATCTCCTTAATGGTAATTATCGGAATTACGGATTCGAC
TATATGGATTGGGCACGCGATAGCACAGATGAAAACCATATTGGGTTGAG
GTACAGGAGAAGGATCGAGAAACCAGGGAACAAATTATTGCCATCCATGG
GCATGTGTGACGTTGAAGAATCGGCCACAAATCTTGGTGCAACAGCCCAC
AACAGCCATTCCTTTGTTTGTGAAATGTCTACACATGTTCTGTATCAATA
TGTTCTTTTGGTCATGTGGTTCCTCTTTGTTGTGTCAATCTCAATATCCA
TCATTGGATGTTTATCCCAGGTTCTTGGTTATTTCTTGCATTTCATGTTT
GGTCAATTTGGAAGCACACCCAAGAAAACCATTTTAAGGGTGATCACACT
GAGGGAGGCTGAGTATTTGAAATTCATCAAATCGAAGAATATGGTGATGT
ATGGTGAAGTGttgagaaaattaaaacaacatCGATCAGATTTGCAAGGG
AAAATTGCTCATGAAGATTTCGAAACAAGTAATGGTTTTGtatgaacttt
tttttttgttgtttttgttttgtttagtttgacagttttttttataaaag
agcataaggcttcggtggcccaaataataagaacaaattaagaacatgtt
aaggctttgtggactctaaaacacttaGAACACTGAACGCTGATCTACTC
ATAAAGATGATGCATAAATTGCTTCAGCAATGGACGGAGTAGCTCGATCT
AGAGTTTTATCTAAGATGTCTTATTGTCGAAAGAAGGAACAAAATCAATG
AATATACGGTTTTCAACTAAAACAACATCGATCAGATTTGCAAGGGAAAA
TTGCTCATGAAGATTTCGAAACAAGTAATGGTTTTGTAtgaactttcttt
tttgtt Run BLAST on NCBI protein sequence of TCONS_00044548-protein >TCONS_00044548-protein ID=TCONS_00044548-protein|Name=TCONS_00044548-protein|organism=Clytia hemisphaerica|type=polypeptide|length=397bp
KMVVVRSLKDIISIKIKPRHDSPCDQFSRIFMTKMLLIASVVMGFQYFSD
KINCLQAHKSDVSKDFVHAACWISGLYVYKERKLVENQIYPGIPSNLKMD
GFTSESYHPCDSTSASNMGVGMCTKLTREYYLHYQWMPFYIGALAIFYYL
PYVLFRIINVDLISLKSVLESVTGDADHIVRNYFNYKINSIGKLRMRIFL
NVIVKCAYVIANLFGFFFTDHLLNGNYRNYGFDYMDWARDSTDENHIGLR
YRRRIEKPGNKLLPSMGMCDVEESATNLGATAHNSHSFVCEMSTHVLYQY
VLLVMWFLFVVSISISIIGCLSQVLGYFLHFMFGQFGSTPKKTILRVITL
REAEYLKFIKSKNMVMYGEVLRKLKQHRSDLQGKIAHEDFETSNGFV Run BLAST on NCBI transcript from alignment at sc0005761:1..2434+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044548 ID=TCONS_00044548|Name=TCONS_00044548|organism=Clytia hemisphaerica|type=transcript|length=2434bp|location=Sequence derived from alignment at sc0005761:1..2434+ (Clytia hemisphaerica)
AAAAATGGTAGTAGTACGCTCTCTAAAAGACATCATCTCTATAAAGATTA
AACCAAGACATGATTCACCTTGCGATCAATTCAGTCGTATATTTATGACC
AAAATGCTACTCATAGCATCTGTCGTAATGGGGTTCCAATATTTCTCGGA
CAAAATCAATTGCCTTCAAGCTCACAAATCTGACGTTTCTAAAGACTTTG
TTCATGCTGCTTGTTGGATATCCGGGCTCTATGTTTACAAAGAAAGAAAG
CTGGTTGAAAATCAAATATATCCTGGAATTCCGTCAAATTTAAAGATGGA
CGGTTTCACATCTGAGAGTTACCATCCTTGTGATTCAACATCGGCATCAA
ATATGGGAGTTGGTATGTGCACCAAATTgaccagagaatattatctcCAT
TATCAATGGATGCCGTTCTATATTGGTGCTTTAGCTATTTTTTATTATCT
CCCATATGTCTTGTTCAGGATCATCAATGTTGATCTTATCTCCTTAAAGT
CAGTTTTGGAATCGGTTACCGGTGATGCAGACCATATCGTCCGAAATTAC
TTCAACTACAAAATCAATTCCATTGGTAAATTGCGCATGCGTATCTTTTT
GAATGTCATTGTGAAATGTGCATACGTTATTGCTAACCTTTTCGGTTTCT
TTTTCACTGATCATCTCCTTAATGGTAATTATCGGAATTACGGATTCGAC
TATATGGATTGGGCACGCGATAGCACAGATGAAAACCATATTGGGTTGAG
GTACAGGAGAAGGATCGAGAAACCAGGTCAGTTTGCATAATAATTATATA
CCCTTAATTCGTACCCACCCAGGCACggtggaagcggggagacttgggag
acttcagcctcccaacttttgagcaaatgagattattttctcaaattcct
agggaattttatctcattttgagccttcagcctccccacttttacggttg
tttcGCCGGGCCTGTGAAATGCaattaattttcttgaaaatgagGTTAAT
GACTCTCTTCATGAAATTCaggacgtaatgttttatacagaAGCACCTGA
AATAGCCCTggtgtttgccactaattttattgtttaatttcaaaatgagt
gGTAAATACCCGGCCTTTTttggtgcttccgtataaaacattacgtcatg
aatatcacgaattaAGGAATCCTTTAATTGCAGCCtggtcaattttttga
attttgcttGAACTCGTTATTCTCTACTTTCAGATTAGCCTCCGCTCTAT
ATCTAAGgtgtaaaatattttcttatgtTTATATTTCTGCTATTTACAGC
TTGTTCTACTGAACCTTGTGTCGGAAAATTTTTAACGCTCCAGGGGGTTG
CCGGAGACGTGCTGCTGGAGtttgaaatttggacaatatcagataatgaa
ttaatatttgatgaatttgggaccctgtcacaTCCCAAAATCGAACCcta
aaaattgtccaaatatTCAAGAGTCtctgtcagatacacatctttaAAAC
TAGTGAATtcgggaccctgtcagatatcatTAGAGCCTTAAAATGTGGAT
CCAGACCAACGGCACGCCCTGTACCCAATCTTGCCTAAGTGACTTCCCTA
GATTTATCGCTTTGAATTTAACTGTGTGTTTTCACAATATTTCTTCCACC
ACAGGGAACAAATTATTGCCATCCATGGGCATGTGTGACGTTGAAGAATC
GGCCACAAATCTTGGTGCAACAGCCCACAACAGCCATTCCTTTGTTTGTG
AAATGTCTACACATGTTCTGTATCAATATGTTCTTTTGGTCATGTGGTTC
CTCTTTGTTGTGTCAATCTCAATATCCATCATTGGATGTTTATCCCAGGT
TCTTGGTTATTTCTTGCATTTCATGTTTGGTCAATTTGGAAGCACACCCA
AGAAAACCATTTTAAGGGTGATCACACTGAGGGAGGCTGAGTATTTGAAA
TTCATCAAATCGAAGAATATGGTGATGTATGGTGAAGTGttgagaaaatt
aaaacaacatCGATCAGATTTGCAAGGGAAAATTGCTCATGAAGATTTCG
AAACAAGTAATGGTTTTGtatgaacttttttttttgttgtttttgttttg
tttagtttgacagttttttttataaaagagcataaggcttcggtggccca
aataataagaacaaattaagaacatgttaaggctttgtggactctaaaac
acttaGAACACTGAACGCTGATCTACTCATAAAGATGATGCATAAATTGC
TTCAGCAATGGACGGAGTAGCTCGATCTAGAGTTTTATCTAAGATGTCTT
ATTGTCGAAAGAAGGAACAAAATCAATGAATATACGGTTTTCAACTAAAA
CAACATCGATCAGATTTGCAAGGGAAAATTGCTCATGAAGATTTCGAAAC
AAGTAATGGTTTTGTAtgaactttcttttttgtt Coding sequence (CDS) from alignment at sc0005761:1..2434+ >TCONS_00044548 ID=TCONS_00044548|Name=TCONS_00044548|organism=Clytia hemisphaerica|type=CDS|length=2388bp|location=Sequence derived from alignment at sc0005761:1..2434+ (Clytia hemisphaerica)
AAAATGGTAGTAGTACGCTCTCTAAAAGACATCATCTCTATAAAGATTAA
ACCAAGACATGATTCACCTTGCGATCAATTCAGTCGTATATTTATGACCA
AAATGCTACTCATAGCATCTGTCGTAATGGGGTTCCAATATTTCTCGGAC
AAAATCAATTGCCTTCAAGCTCACAAATCTGACGTTTCTAAAGACTTTGT
TCATGCTGCTTGTTGGATATCCGGGCTCTATGTTTACAAAGAAAGAAAGC
TGGTTGAAAATCAAATATATCCTGGAATTCCGTCAAATTTAAAGATGGAC
GGTTTCACATCTGAGAGTTACCATCCTTGTGATTCAACATCGGCATCAAA
TATGGGAGTTGGTATGTGCACCAAATTgaccagagaatattatctcCATT
ATCAATGGATGCCGTTCTATATTGGTGCTTTAGCTATTTTTTATTATCTC
CCATATGTCTTGTTCAGGATCATCAATGTTGATCTTATCTCCTTAAAGTC
AGTTTTGGAATCGGTTACCGGTGATGCAGACCATATCGTCCGAAATTACT
TCAACTACAAAATCAATTCCATTGGTAAATTGCGCATGCGTATCTTTTTG
AATGTCATTGTGAAATGTGCATACGTTATTGCTAACCTTTTCGGTTTCTT
TTTCACTGATCATCTCCTTAATGGTAATTATCGGAATTACGGATTCGACT
ATATGGATTGGGCACGCGATAGCACAGATGAAAACCATATTGGGTTGAGG
TACAGGAGAAGGATCGAGAAACCAGGGAACAAATTATTGCCATCCATGGG
CATGTGTGACGTTGAAGAATCGGCCACAAATCTTGGTGCAACAGCCCACA
ACAGCCATTCCTTTGTTTGTGAAATGTCTACACATGTTCTGTATCAATAT
GTTCTTTTGGTCATGTGGTTCCTCTTTGTTGTGTCAATCTCAATATCCAT
CATTGGATGTTTATCCCAGGTTCTTGGTTATTTCTTGCATTTCATGTTTG
GTCAATTTGGAAGCACACCCAAGAAAACCATTTTAAGGGTGATCACACTG
AGGGAGGCTGAGTATTTGAAATTCATCAAATCGAAGAATATGGTGATGTA
TGGTGAAGTGttgagaaaattaaaacaacatCGATCAGATTTGCAAGGGA
AAATTGCTCATGAAGATTTCGAAACAAGTAATGGTTTTGtatgaAAAATG
GTAGTAGTACGCTCTCTAAAAGACATCATCTCTATAAAGATTAAACCAAG
ACATGATTCACCTTGCGATCAATTCAGTCGTATATTTATGACCAAAATGC
TACTCATAGCATCTGTCGTAATGGGGTTCCAATATTTCTCGGACAAAATC
AATTGCCTTCAAGCTCACAAATCTGACGTTTCTAAAGACTTTGTTCATGC
TGCTTGTTGGATATCCGGGCTCTATGTTTACAAAGAAAGAAAGCTGGTTG
AAAATCAAATATATCCTGGAATTCCGTCAAATTTAAAGATGGACGGTTTC
ACATCTGAGAGTTACCATCCTTGTGATTCAACATCGGCATCAAATATGGG
AGTTGGTATGTGCACCAAATTgaccagagaatattatctcCATTATCAAT
GGATGCCGTTCTATATTGGTGCTTTAGCTATTTTTTATTATCTCCCATAT
GTCTTGTTCAGGATCATCAATGTTGATCTTATCTCCTTAAAGTCAGTTTT
GGAATCGGTTACCGGTGATGCAGACCATATCGTCCGAAATTACTTCAACT
ACAAAATCAATTCCATTGGTAAATTGCGCATGCGTATCTTTTTGAATGTC
ATTGTGAAATGTGCATACGTTATTGCTAACCTTTTCGGTTTCTTTTTCAC
TGATCATCTCCTTAATGGTAATTATCGGAATTACGGATTCGACTATATGG
ATTGGGCACGCGATAGCACAGATGAAAACCATATTGGGTTGAGGTACAGG
AGAAGGATCGAGAAACCAGGGAACAAATTATTGCCATCCATGGGCATGTG
TGACGTTGAAGAATCGGCCACAAATCTTGGTGCAACAGCCCACAACAGCC
ATTCCTTTGTTTGTGAAATGTCTACACATGTTCTGTATCAATATGTTCTT
TTGGTCATGTGGTTCCTCTTTGTTGTGTCAATCTCAATATCCATCATTGG
ATGTTTATCCCAGGTTCTTGGTTATTTCTTGCATTTCATGTTTGGTCAAT
TTGGAAGCACACCCAAGAAAACCATTTTAAGGGTGATCACACTGAGGGAG
GCTGAGTATTTGAAATTCATCAAATCGAAGAATATGGTGATGTATGGTGA
AGTGttgagaaaattaaaacaacatCGATCAGATTTGCAAGGGAAAATTG
CTCATGAAGATTTCGAAACAAGTAATGGTTTTGtatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044548-exon-sc0005761-1491911889:1..776 | TCONS_00044548-exon-sc0005761-1491911889:1..776 | Clytia hemisphaerica | exon |
| TCONS_00044548-exon-sc0005761-1510915933:1..776 | TCONS_00044548-exon-sc0005761-1510915933:1..776 | Clytia hemisphaerica | exon |
| TCONS_00044548-exon-sc0005761-1575043694:1..776 | TCONS_00044548-exon-sc0005761-1575043694:1..776 | Clytia hemisphaerica | exon |
| TCONS_00044548-exon-sc0005761-1491911889:1655..2434 | TCONS_00044548-exon-sc0005761-1491911889:1655..2434 | Clytia hemisphaerica | exon |
| TCONS_00044548-exon-sc0005761-1510915933:1655..2434 | TCONS_00044548-exon-sc0005761-1510915933:1655..2434 | Clytia hemisphaerica | exon |
| TCONS_00044548-exon-sc0005761-1575043694:1655..2434 | TCONS_00044548-exon-sc0005761-1575043694:1655..2434 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005761 | supercontig | sc0005761:1..2434 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000990 | Innexin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005921 | gap junction |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0005921 |
gap junction |
Blast
The following BLAST results are available for this feature:
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