TCONS_00044546 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044546
Unique NameTCONS_00044546
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length448

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044546 ID=TCONS_00044546|Name=TCONS_00044546|organism=Clytia hemisphaerica|type=transcript|length=448bp
TGAATCGTCAATCAAATCTTGCTTTAGCGTTTAGGTGATAAATGTTCTTT
TGCTTCACTTCAAATCTGCTAATTGTAGCTAAAGAAATTCATAGTATAAC
TTGATCTGGCAATTAATACATTGGGTTGGTTAGGTCGCCATATGCAGTGA
GTGATCTTGGTTGGGACATGCTATCAACTGTTATCATAGATTAAGagtaa
ttgaaacaataataaacttcttcttAATCTAatctgttttatttttcttg
tccaCACAAACACATCCATCTtccaaaccaaatgtttcaccTCAAAAGTG
ATTCTAGTGAAATTGGAGGTTTGTTTTCAACAACATCACGAGTGTGGTAG
TTTGAATGGAATAATATCAATGAAGAACCATAAATTTCATATATAATTTC
AGTTTATAATCTACATCAAGAATTGTCTGCTGCTTGCACTTGCAGTAG
Run BLAST on NCBI

transcript from alignment at sc0005758:1986..2433

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044546 ID=TCONS_00044546|Name=TCONS_00044546|organism=Clytia hemisphaerica|type=transcript|length=448bp|location=Sequence derived from alignment at sc0005758:1986..2433 (Clytia hemisphaerica)
CTACTGCAAGTGCAAGCAGCAGACAATTCTTGATGTAGATTATAAACTGA
AATTATATATGAAATTTATGGTTCTTCATTGATATTATTCCATTCAAACT
ACCACACTCGTGATGTTGTTGAAAACAAACCTCCAATTTCACTAGAATCA
CTTTTGAggtgaaacatttggtttggaAGATGGATGTGTTTGTGtggaca
agaaaaataaaacagatTAGATTaagaagaagtttattattgtttcaatt
actCTTAATCTATGATAACAGTTGATAGCATGTCCCAACCAAGATCACTC
ACTGCATATGGCGACCTAACCAACCCAATGTATTAATTGCCAGATCAAGT
TATACTATGAATTTCTTTAGCTACAATTAGCAGATTTGAAGTGAAGCAAA
AGAACATTTATCACCTAAACGCTAAAGCAAGATTTGATTGACGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028168XLOC_028168Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044546-exon-sc0005758-1491911889:1986..2433TCONS_00044546-exon-sc0005758-1491911889:1986..2433Clytia hemisphaericaexon
TCONS_00044546-exon-sc0005758-1510915933:1986..2433TCONS_00044546-exon-sc0005758-1510915933:1986..2433Clytia hemisphaericaexon
TCONS_00044546-exon-sc0005758-1575043694:1986..2433TCONS_00044546-exon-sc0005758-1575043694:1986..2433Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005758supercontigsc0005758:1986..2433 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.281833	1.11654	0.173788	1.89632	0.809837	1.08467	0.42986	0.25898	0	0.503051	0.366951	0.276473	0.128139	0.427167	0.86251	0.180517	0.300687	0.822304	0.75776	0.834875	0.704234	0.914626	0.56396	0	0	1.09425	0.344487	0.678938	0.4831
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044546 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top