TCONS_00044531 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044531
Unique NameTCONS_00044531
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044531 ID=TCONS_00044531|Name=TCONS_00044531|organism=Clytia hemisphaerica|type=transcript|length=515bp
tcagtTACATTGAGAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAAT
CATTTAAGACGATTTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCT
TTATCTCTTCCTCAAATACACCATGCAACAGAATCTACCAGAGACGTTTT
CAAGTTGTCTGGACATTTGGATCATCTTCTTAGATTATCTTGTTGATAAA
GTTTCTTCGTGCATCACAAGTAATTTCAAAGTGGCTGCTATGGAAAGATA
TGTGGCTTGTCTACAAGAACTGTTGATTGAAATGCTTAAGAAAATTCAAT
TCCAACACAACGCTGATTGGCTGGACACTGTTGACATGGAGAAATATGAC
GATGACAGTGAAACAGAATGGGAGAAGTTTATCAGTCCGTGTTTAGAAGT
CATTGAAAAGATTTCACAATTGTTGCCCGAAGAATCTTTCACACAATGTT
CACAAACTTTCAAAGAAAACTTGGATGTCTACTTTGCTTTATCAAATGTT
ATTTCAAATGATTGT
Run BLAST on NCBI

protein sequence of TCONS_00044531-protein

>TCONS_00044531-protein ID=TCONS_00044531-protein|Name=TCONS_00044531-protein|organism=Clytia hemisphaerica|type=polypeptide|length=171bp
SYIEKFTEYLSLFIGNHLRRFEPSDHFPTVELLYLFLKYTMQQNLPETFS
SCLDIWIIFLDYLVDKVSSCITSNFKVAAMERYVACLQELLIEMLKKIQF
QHNADWLDTVDMEKYDDDSETEWEKFISPCLEVIEKISQLLPEESFTQCS
QTFKENLDVYFALSNVISNDC
Run BLAST on NCBI

transcript from alignment at sc0005737:197..3479+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044531 ID=TCONS_00044531|Name=TCONS_00044531|organism=Clytia hemisphaerica|type=transcript|length=3283bp|location=Sequence derived from alignment at sc0005737:197..3479+ (Clytia hemisphaerica)
tcagtTACATTGAGAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAAT
CATTTAAGACGATTTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCT
TTATCTCTTCCTCAAATACACCATGCAACAGGTAGGTTACGTCTTACtct
tattgggcttttccagaaaaaaaccgtataccccttgccgaggaggtcca
tccctctgtggctggaaatactgtaaccccctggaattccaggcaatttc
agctttaaacccctctggaattctgaattttagtaggatttgaAAAGCTA
CccctatggaattccagttatttttgacagatttttgtatctccctttGG
AATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtgatatatgagatt
atgagcatgcatacatcgtaacttttttaatcgtagggcgagcttggtta
caatagcatacttctcctgtttctttatacctccatggtctACCTGAGTC
TACAGGGCCGGTTTCTACATCCAAAATTGGCCGTTGAACGTGAAATATTT
CTGGAATATTCCTATTAGTCTATTATACCAATAGTGCGTTTTACATCTAT
GACATCTTCAGCTGTCAGGCCAGAAACGACTATTGTAAGTAGGAGGtagg
ggttcgattcccactcgcagtgCTGTGATTCACTTGGTTAGTGAATATAC
CTTCGCCTGGGCCAACCAATGCCATGTGAGATAAATTgggtagacagaaa
ctcaagaaGCCTGTCCGTGACTGCTAGGTATCGATTCCACAATCCATCGT
GAAAAAGGTGAGGGAGCCCTTGCCTTATTTCCTAGTGGTTACGCTGGATT
AACGCATTTGATCCGAAAAACTCTGTGTCAGTGTCTCGCAAGCTGACAGG
CAGTATAAACTACAGCGTAAGAAGTTTCTAACGAGACGACTCCTAAAGTA
AACCACTCAATCTAGAACTGGGCACCCTCTGCAAGGAGAAGCCAGTCATC
ATTGTATATAATCaataatatatttttcagtTACATTGAGAAGTTCACAG
AATATTTGAGTTTGTTCATCGGCAATCATTTAAGACGATTTGAACCGAGT
GATCATTTCCCAACTGTTGAGCTGCTTTATCTCTTCCTCAAATACACCAT
GCAACAGGTAGGTTACGTCTTACtcttattgggcttttccagaaaaaaac
cgtataccccttgccgaggaggtccatccctctgtggctggaaatactgt
aaccccctggaattccaggcaatttcagctttaaacccctctggaattct
gaattttagtaggatttgaAAAGCTACccctatggaattccagttatttt
tgacagatttttgtatctccctttggaattccgccacatatcaaaccttt
accccttggaacggaaatggacctcctcaacagggggtatacggtttttt
ccTTTGTTCAGTTCAGAGCATAAAACAGCTGGATATGCGATTCGCGATAA
GCAGTGATAAGAGGATCTCCGAGGCACGAGCATTATACTCTATAGATTGA
GTGAGGCCataaaaatttccgaaaaaaaaatccaaatggGATCCCGTTTT
AAACACTATTCGTATCTACTGAAGCCTAAGGAGGAAGGCATATATAATTT
ATCTTTTATATTAtactaaaatcttaaaaaagcaAATTATGATCTTTCAT
TACGCAGAATCTACCAGAGACGTTTTCAAGTTGTCTGGACATTTGGATCA
TCTTCTTAGATTATCTTGTTGATAAAGTTTCTTCGTGCATCACAAGTAAT
TTCAAAGTGGCTGCTATGGAAAGGTAAGGTTGTGTTGGGGTATTTTGGGT
TATATGCACAACCTTAATGACTTTTAtgtgacttttcagtttttttctac
CTCATACGTTATAATCTTTGCAGCCAATCAGTTGtcgtaataaaaatgac
gtaacCTTGACTGCTATGTTAAAGTTTTCGTCAAATTTACGTGACTCTAA
TCAGCATTGATtggtttttatattttctaccATAGATATGTGGCTTGTCT
ACAAGAACTGTTGATTGAAATGCTTAAGAAAATTCAATTCCAACACAACG
CTGATTGGCTGGACACTGTTGACATGGAGAAATATGACGATGACGTAAGC
TATTCAAAATACTCTCATCTGATTGATTAAGAAGATGAagtataattttg
aattttatattattttcatgatATACACTACTTCACTTGTACAGCAATCT
CTCTTGTGCAATGTTCTCTGATTTAGTTAAGGGCCTATCTTCACTTGGGA
AGCTGTATGTCTTGTCTTGCTTTGCACTACTGGAATATCTNGATTTAGTT
TAGGGCCTATCTTCACTTGGGAAGCTGTATGTCTTGTCTTGCTTTGCACT
ACTGGAATATCTTCTGACTGTTCAATTCATGTTCTACAACATTACATAGA
TGCTTTGCCTTATAGACAATTCTgctcacttttatttttttcgttaCAGA
GTGAAACAGAATGGGAGAAGTTTATCAGTCCGTGTTTAGAAGTCATTGAA
AAGATTTCACAATTGTTGCCCGAAGAATCTTTCACACAATGTGTAAGTTG
ATCCGCTTAgttttttcttcatcatttttAATAACATCATCTCTGCCTTT
TTTTGTCGGCTATCTACTATCCAATGGCTTTTATTTAAAATCCCTTTTAA
AATCCTTCCTCTTCTAGTCACAAACTTTCAAAGAAAACTTGGATGTCTAC
TTTGCTTTATCAAATGTTATTTCAAATGATTGT

Coding sequence (CDS) from alignment at sc0005737:197..3479+

>TCONS_00044531 ID=TCONS_00044531|Name=TCONS_00044531|organism=Clytia hemisphaerica|type=CDS|length=2565bp|location=Sequence derived from alignment at sc0005737:197..3479+ (Clytia hemisphaerica)
agtTACATTGAGAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAATCA
TTTAAGACGATTTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCTTT
ATCTCTTCCTCAAATACACCATGCAACAGAATCTACCAGAGACGTTTTCA
AGTTGTCTGGACATTTGGATCATCTTCTTAGATTATCTTGTTGATAAAGT
TTCTTCGTGCATCACAAGTAATTTCAAAGTGGCTGCTATGGAAAGATATG
TGGCTTGTCTACAAGAACTGTTGATTGAAATGCTTAAGAAAATTCAATTC
CAACACAACGCTGATTGGCTGGACACTGTTGACATGGAGAAATATGACGA
TGACAGTGAAACAGAATGGGAGAAGTTTATCAGTCCGTGTTTAGAAGTCA
TTGAAAAGATTTCACAATTGTTGCCCGAAGAATCTTTCACACAATGTTCA
CAAACTTTCAAAGAAAACTTGGATGTCTACTTTGCTTTATCAAATGTTAT
TTCAAATGATTGTagtTACATTGAGAAGTTCACAGAATATTTGAGTTTGT
TCATCGGCAATCATTTAAGACGATTTGAACCGAGTGATCATTTCCCAACT
GTTGAGCTGCTTTATCTCTTCCTCAAATACACCATGCAACAGAATCTACC
AGAGACGTTTTCAAGTTGTCTGGACATTTGGATCATCTTCTTAGATTATC
TTGTTGATAAAGTTTCTTCGTGCATCACAAGTAATTTCAAAGTGGCTGCT
ATGGAAAGATATGTGGCTTGTCTACAAGAACTGTTGATTGAAATGCTTAA
GAAAATTCAATTCCAACACAACGCTGATTGGCTGGACACTGTTGACATGG
AGAAATATGACGATGACAGTGAAACAGAATGGGAGAAGTTTATCAGTCCG
TGTTTAGAAGTCATTGAAAAGATTTCACAATTGTTGCCCGAAGAATCTTT
CACACAATGTTCACAAACTTTCAAAGAAAACTTGGATGTCTACTTTGCTT
TATCAAATGTTATTTCAAATGATTGTagtTACATTGAGAAGTTCACAGAA
TATTTGAGTTTGTTCATCGGCAATCATTTAAGACGATTTGAACCGAGTGA
TCATTTCCCAACTGTTGAGCTGCTTTATCTCTTCCTCAAATACACCATGC
AACAGAATCTACCAGAGACGTTTTCAAGTTGTCTGGACATTTGGATCATC
TTCTTAGATTATCTTGTTGATAAAGTTTCTTCGTGCATCACAAGTAATTT
CAAAGTGGCTGCTATGGAAAGATATGTGGCTTGTCTACAAGAACTGTTGA
TTGAAATGCTTAAGAAAATTCAATTCCAACACAACGCTGATTGGCTGGAC
ACTGTTGACATGGAGAAATATGACGATGACAGTGAAACAGAATGGGAGAA
GTTTATCAGTCCGTGTTTAGAAGTCATTGAAAAGATTTCACAATTGTTGC
CCGAAGAATCTTTCACACAATGTTCACAAACTTTCAAAGAAAACTTGGAT
GTCTACTTTGCTTTATCAAATGTTATTTCAAATGATTGTagtTACATTGA
GAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAATCATTTAAGACGAT
TTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCTTTATCTCTTCCTC
AAATACACCATGCAACAGAATCTACCAGAGACGTTTTCAAGTTGTCTGGA
CATTTGGATCATCTTCTTAGATTATCTTGTTGATAAAGTTTCTTCGTGCA
TCACAAGTAATTTCAAAGTGGCTGCTATGGAAAGATATGTGGCTTGTCTA
CAAGAACTGTTGATTGAAATGCTTAAGAAAATTCAATTCCAACACAACGC
TGATTGGCTGGACACTGTTGACATGGAGAAATATGACGATGACAGTGAAA
CAGAATGGGAGAAGTTTATCAGTCCGTGTTTAGAAGTCATTGAAAAGATT
TCACAATTGTTGCCCGAAGAATCTTTCACACAATGTTCACAAACTTTCAA
AGAAAACTTGGATGTCTACTTTGCTTTATCAAATGTTATTTCAAATGATT
GTagtTACATTGAGAAGTTCACAGAATATTTGAGTTTGTTCATCGGCAAT
CATTTAAGACGATTTGAACCGAGTGATCATTTCCCAACTGTTGAGCTGCT
TTATCTCTTCCTCAAATACACCATGCAACAGAATCTACCAGAGACGTTTT
CAAGTTGTCTGGACATTTGGATCATCTTCTTAGATTATCTTGTTGATAAA
GTTTCTTCGTGCATCACAAGTAATTTCAAAGTGGCTGCTATGGAAAGATA
TGTGGCTTGTCTACAAGAACTGTTGATTGAAATGCTTAAGAAAATTCAAT
TCCAACACAACGCTGATTGGCTGGACACTGTTGACATGGAGAAATATGAC
GATGACAGTGAAACAGAATGGGAGAAGTTTATCAGTCCGTGTTTAGAAGT
CATTGAAAAGATTTCACAATTGTTGCCCGAAGAATCTTTCACACAATGTT
CACAAACTTTCAAAGAAAACTTGGATGTCTACTTTGCTTTATCAAATGTT
ATTTCAAATGATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028154XLOC_028154Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044531-proteinTCONS_00044531-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044531-exon-sc0005737-1491911889:197..327TCONS_00044531-exon-sc0005737-1491911889:197..327Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1510915933:197..327TCONS_00044531-exon-sc0005737-1510915933:197..327Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1575043694:197..327TCONS_00044531-exon-sc0005737-1575043694:197..327Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1491911889:2404..2519TCONS_00044531-exon-sc0005737-1491911889:2404..2519Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1510915933:2404..2519TCONS_00044531-exon-sc0005737-1510915933:2404..2519Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1575043694:2404..2519TCONS_00044531-exon-sc0005737-1575043694:2404..2519Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1491911889:2732..2840TCONS_00044531-exon-sc0005737-1491911889:2732..2840Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1510915933:2732..2840TCONS_00044531-exon-sc0005737-1510915933:2732..2840Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1575043694:2732..2840TCONS_00044531-exon-sc0005737-1575043694:2732..2840Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1491911889:3196..3288TCONS_00044531-exon-sc0005737-1491911889:3196..3288Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1510915933:3196..3288TCONS_00044531-exon-sc0005737-1510915933:3196..3288Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1575043694:3196..3288TCONS_00044531-exon-sc0005737-1575043694:3196..3288Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1491911889:3414..3479TCONS_00044531-exon-sc0005737-1491911889:3414..3479Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1510915933:3414..3479TCONS_00044531-exon-sc0005737-1510915933:3414..3479Clytia hemisphaericaexon
TCONS_00044531-exon-sc0005737-1575043694:3414..3479TCONS_00044531-exon-sc0005737-1575043694:3414..3479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005737supercontigsc0005737:197..3479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.75355	3.84404	2.10038	1.92646	46.2802	31.135	36.3705	43.6785	23.1551	29.8915	30.5404	18.6862	21.359	8.1703	19.4814	26.3221	21.5849	24.9759	12.5936	21.2799	21.4107	26.172	23.6624	24.0506	28.5059	28.3293	26.2312	24.2621	36.6751	13.4001
Blast
[Close]
BLAST of TCONS_00044531 vs. Swiss-Prot (Human)
Match: XPO6 (Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 6.810e-35
Identity = 75/167 (44.91%), Postives = 102/167 (61.08%), Query Frame = 3 
Query:    3 SYIEKFTEYLSLFIGNHLRRFEPSDHFPTVELLYLFLKYTMQQNLPETFSSCLDIWIIFLDYLVDKVSSCITSNFKVAAMERYVACLQELLIEMLKKIQFQHNADWLDTVDMEKYDDDSETEWEKFISPCLEVIEKISQLLPEESFTQCSQTFKENLDVYFALSNVI 503
            SYIEKFT++L LF+  HLRR E    FP VE L L  KYT  Q   E + SCLDIW +FLDYL  K+ S +    K A + RY   L  LL E+L +IQF++N   L+ +D E  DDD +TEW++++   LEV+ K+ +LLP  +F+      ++NL+VY  L   I
Sbjct:  366 SYIEKFTDFLRLFVSVHLRRIESYSQFPVVEFLTLLFKYTFHQPTHEGYFSCLDIWTLFLDYLTSKIKSRLGD--KEAVLNRYEDALVLLLTEVLNRIQFRYNQAQLEELDDETLDDDQQTEWQRYLRQSLEVVAKVMELLPTHAFSTLFPVLQDNLEVYLGLQQFI 530
The following BLAST results are available for this feature:
BLAST of TCONS_00044531 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPO66.810e-3544.91Exportin-6 OS=Homo sapiens GN=XPO6 PE=1 SV=1[more]
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