TCONS_00044510 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044510
Unique NameTCONS_00044510
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1640

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044510 ID=TCONS_00044510|Name=TCONS_00044510|organism=Clytia hemisphaerica|type=transcript|length=1640bp
CATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAG
ACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACAGAAGTCGC
TCCTGAGGAAAATCAACCATCCGAAAAGACTGAAGACGCTCAAGAGGAAG
TCCAACTATCCGAAAAAACTAAAGTCGCTTCAGTTGAAAGTAAACCGTCT
GAAAAGACTGAAATTGTTCCAGTGGAAGCTCAACCATCCGAAAAGACTGA
AGTCGCTCCTGTGGAAGCTCACCCATTTGAAAAAACTGAGGTCACTCCTG
TGGAAACTCAACTATCTGAAAAGACTGAAGTTGCTCCAGAAAAAACTCAA
CCATCTGAAAAGACTGAATTCGCTCCTGTGGAAACTCAACCGTCCGAAAA
GACTGAAATCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCG
CTCCAGAAAAAACTCAACCGTCCGAAAAGACTGAAGTTGCTCCTGTAGAA
GCTCAACCATCTGAAAAGACTGAAATCGTCCCAGTGGAAACTCAACCATT
CAAAAAGATTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTG
AAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCT
GTGGAAACTCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCA
ACAATCCGAAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAA
AGACTGAAGTCGCTCCAGTTGAAAGTAAACCGTCTGAAAAGACTGAAATT
GTCCCAGTGGAAGCTCAACCATTTGAAAGGACTGAGGTCGCTCCAGTGGA
AACTCAACTATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACTATCTGAAAAGACT
GAAGTTGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACTATCTGAA
AAGACTGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGT
CGCTCCAGAGGAAGCTCAACTATCTGAAAAGACGGAAGTCGCTCCTGTAG
AAGCTCAACCATCTGAAAAGACTGAAGTTGCTCCAGAGGAAGTTCAACCA
TCTGAAAAGAATGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGAC
TGAAGTCGCTCCAGTGGAAACTCAACTATCTGAAAAGACTGAAGTCGCTC
CTGTGGAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTT
AAGCCATCTGAAAAGACNCGTCCCAGTGGAAACTCAACCATTCAAAAAGA
TTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTGAAACAACA
CCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAA
TCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCAACCATCCG
AAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGA
Run BLAST on NCBI

protein sequence of TCONS_00044510-protein

>TCONS_00044510-protein ID=TCONS_00044510-protein|Name=TCONS_00044510-protein|organism=Clytia hemisphaerica|type=polypeptide|length=483bp
SEKTEVAPVETQPSEKTEVAPVETQPSEKTEVAPEENQPSEKTEDAQEEV
QLSEKTKVASVESKPSEKTEIVPVEAQPSEKTEVAPVEAHPFEKTEVTPV
ETQLSEKTEVAPEKTQPSEKTEFAPVETQPSEKTEIAPVEAQPSEKTEVA
PEKTQPSEKTEVAPVEAQPSEKTEIVPVETQPFKKIEIAQEQTQPSEKTE
TTPEEVKPSEKTEVAPVETQPSEKTEIAPVETQQSEKTEVAQEEVQLSEK
TEVAPVESKPSEKTEIVPVEAQPFERTEVAPVETQLSEKTEVAPVETQPS
EKTEVAPEEAQLSEKTEVAPVKTQPSEKTEVAPEETQPSEKTEVAPVETQ
SSEKTEVAPEETQLSEKTEVAPVKTQPSEKTEVAPEEAQLSEKTEVAPVE
AQPSEKTEVAPEEVQPSEKNEVAPVKTQPSEKTEVAPVETQLSEKTEVAP
VETQPSEKTETTPEEVKPSEKXRPSGNSTIQKD
Run BLAST on NCBI

transcript from alignment at sc0005694:1685..3948-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044510 ID=TCONS_00044510|Name=TCONS_00044510|organism=Clytia hemisphaerica|type=transcript|length=2264bp|location=Sequence derived from alignment at sc0005694:1685..3948- (Clytia hemisphaerica)
CATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAG
ACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACAGAAGTCGC
TCCTGAGGAAAATCAACCATCCGAAAAGACTGAAGACGCTCAAGAGGAAG
TCCAACTATCCGAAAAAACTAAAGTCGCTTCAGTTGAAAGTAAACCGTCT
GAAAAGACTGAAATTGTTCCAGTGGAAGCTCAACCATCCGAAAAGACTGA
AGTCGCTCCTGTGGAAGCTCACCCATTTGAAAAAACTGAGGTCACTCCTG
TGGAAACTCAACTATCTGAAAAGACTGAAGTTGCTCCAGAAAAAACTCAA
CCATCTGAAAAGACTGAATTCGCTCCTGTGGAAACTCAACCGTCCGAAAA
GACTGAAATCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCG
CTCCAGAAAAAACTCAACCGTCCGAAAAGACTGAAGTTGCTCCTGTAGAA
GCTCAACCATCTGAAAAGACTGAAATCGTCCCAGTGGAAACTCAACCATT
CAAAAAGATTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTG
AAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCT
GTGGAAACTCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCA
ACAATCCGAAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAA
AGACTGAAGTCGCTCCAGTTGAAAGTAAACCGTCTGAAAAGACTGAAATT
GTCCCAGTGGAAGCTCAACCATTTGAAAGGACTGAGGTCGCTCCAGTGGA
AACTCAACTATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACTATCTGAAAAGACT
GAAGTTGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACTATCTGAA
AAGACTGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGT
CGCTCCAGAGGAAGCTCAACTATCTGAAAAGACGGAAGTCGCTCCTGTAG
AAGCTCAACCATCTGAAAAGACTGAAGTTGCTCCAGAGGAAGTTCAACCA
TCTGAAAAGAATGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGAC
TGAAGTCGCTCAAGAGGAAGATCAACCATCTGAAAAGACTGAAATCGTCC
CAGTGGAAACTCAACCATTCAAAAAGATTGAAATCGCTCAAGAGCAAACT
CAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCCATCTGA
AAAGACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGACTGAAG
TCGCTCAAGAGGAAAATCAACCATCCGAAAAGACTGAAATCGCCCCTGTG
GAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCC
ATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGA
CTGAAATCGCCCCTGTGGAAACTCAACCATCTGAAAAGACTGAAACAACA
CCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCTGTGGAAAA
TCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCAACCATCCG
AAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAAAGACTGAA
GTCGCTCCAGTTGAAAGTAAACTGTCTGAAAAGACTGAAATTGTCCCAGT
GGAAGCTCGACCATTTGAAAAGACTGAGGTCGCTCCAGTGGAAACTCAAC
TATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCTGAAAAG
ACTGAAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACNCGTCCCAG
TGGAAACTCAACCATTCAAAAAGATTGAAATCGCTCAAGAGCAAACTCAA
CCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGCCATCTGAAAA
GACTGAAGTCGCTCCTGTGGAAAATCAACCATCCGAAAAGACTGAAATCG
CTCCTGTGGAAACTCAACCATCCGAAAAGACTGAAGTCGCTCAAGAGGAA
GTCCAACTATCCGA

Coding sequence (CDS) from alignment at sc0005694:1685..3948-

>TCONS_00044510 ID=TCONS_00044510|Name=TCONS_00044510|organism=Clytia hemisphaerica|type=CDS|length=2904bp|location=Sequence derived from alignment at sc0005694:1685..3948- (Clytia hemisphaerica)
GTCGCTCCAGTGGAAACTCAACTATCTGAAAAGACTGAAGTCGCTCCTGT
GGAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAAGC
CATCTGAAAAGACNCGTCCCAGTGGAAACTCAACCATTCAAAAAGATTGA
TCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGAC
TGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACAGAAGTCGCTC
CTGAGGAAAATCAACCATCCGAAAAGACTGAAGACGCTCAAGAGGAAGTC
CAACTATCCGAAAAAACTAAAGTCGCTTCAGTTGAAAGTAAACCGTCTGA
AAAGACTGAAATTGTTCCAGTGGAAGCTCAACCATCCGAAAAGACTGAAG
TCGCTCCTGTGGAAGCTCACCCATTTGAAAAAACTGAGGTCACTCCTGTG
GAAACTCAACTATCTGAAAAGACTGAAGTTGCTCCAGAAAAAACTCAACC
ATCTGAAAAGACTGAATTCGCTCCTGTGGAAACTCAACCGTCCGAAAAGA
CTGAAATCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCGCT
CCAGAAAAAACTCAACCGTCCGAAAAGACTGAAGTTGCTCCTGTAGAAGC
TCAACCATCTGAAAAGACTGAAATCGTCCCAGTGGAAACTCAACCATTCA
AAAAGATTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTGAA
ACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCTGT
GGAAACTCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCAAC
AATCCGAAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAAAG
ACTGAAGTCGCTCCAGTTGAAAGTAAACCGTCTGAAAAGACTGAAATTGT
CCCAGTGGAAGCTCAACCATTTGAAAGGACTGAGGTCGCTCCAGTGGAAA
CTCAACTATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCT
GAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACTATCTGAAAAGACTGA
AGTTGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCCTG
AGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAA
TCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACTATCTGAAAA
GACTGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCG
CTCCAGAGGAAGCTCAACTATCTGAAAAGACGGAAGTCGCTCCTGTAGAA
GCTCAACCATCTGAAAAGACTGAAGTTGCTCCAGAGGAAGTTCAACCATC
TGAAAAGAATGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTG
AAGTCGCTCCAGTGGAAACTCAACTATCTGAAAAGACTGAAGTCGCTCCT
GTGGAAACTCAACCATCTGAAAAGACTGAAACAACACCGGAGGAAGTTAA
GCCATCTGAAAAGACNCGTCCCAGTGGAAACTCAACCATTCAAAAAGATT
GATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAG
ACTGAAGTCGCTCCTGTGGAAACTCAACCATCCGAAAAGACAGAAGTCGC
TCCTGAGGAAAATCAACCATCCGAAAAGACTGAAGACGCTCAAGAGGAAG
TCCAACTATCCGAAAAAACTAAAGTCGCTTCAGTTGAAAGTAAACCGTCT
GAAAAGACTGAAATTGTTCCAGTGGAAGCTCAACCATCCGAAAAGACTGA
AGTCGCTCCTGTGGAAGCTCACCCATTTGAAAAAACTGAGGTCACTCCTG
TGGAAACTCAACTATCTGAAAAGACTGAAGTTGCTCCAGAAAAAACTCAA
CCATCTGAAAAGACTGAATTCGCTCCTGTGGAAACTCAACCGTCCGAAAA
GACTGAAATCGCTCCTGTGGAAGCTCAACCATCTGAAAAGACTGAAGTCG
CTCCAGAAAAAACTCAACCGTCCGAAAAGACTGAAGTTGCTCCTGTAGAA
GCTCAACCATCTGAAAAGACTGAAATCGTCCCAGTGGAAACTCAACCATT
CAAAAAGATTGAAATCGCTCAAGAGCAAACTCAACCATCTGAAAAGACTG
AAACAACACCGGAGGAAGTTAAGCCATCTGAAAAGACTGAAGTCGCTCCT
GTGGAAACTCAACCATCCGAAAAGACTGAAATCGCTCCTGTGGAAACTCA
ACAATCCGAAAAGACTGAAGTCGCTCAAGAGGAAGTCCAACTATCCGAAA
AGACTGAAGTCGCTCCAGTTGAAAGTAAACCGTCTGAAAAGACTGAAATT
GTCCCAGTGGAAGCTCAACCATTTGAAAGGACTGAGGTCGCTCCAGTGGA
AACTCAACTATCTGAAAAGACTGAAGTCGCTCCTGTGGAAACTCAACCAT
CTGAAAAGACTGAAGTCGCTCCAGAGGAAGCTCAACTATCTGAAAAGACT
GAAGTTGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGTCGCTCC
TGAGGAAACTCAGCCATCCGAAAAGACTGAAGTCGCTCCTGTGGAAACTC
AATCATCTGAAAAGACTGAAGTCGCTCCAGAGGAAACTCAACTATCTGAA
AAGACTGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGACTGAAGT
CGCTCCAGAGGAAGCTCAACTATCTGAAAAGACGGAAGTCGCTCCTGTAG
AAGCTCAACCATCTGAAAAGACTGAAGTTGCTCCAGAGGAAGTTCAACCA
TCTGAAAAGAATGAAGTCGCTCCTGTGAAAACTCAACCATCTGAAAAGAC
TGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028134XLOC_028134Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044510-proteinTCONS_00044510-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044510-exon-sc0005694-1575043694:2645..3948TCONS_00044510-exon-sc0005694-1575043694:2645..3948Clytia hemisphaericaexon
TCONS_00044510-exon-sc0005694-1575043694:1685..2020TCONS_00044510-exon-sc0005694-1575043694:1685..2020Clytia hemisphaericaexon
TCONS_00044510-exon-sc0005694-1510915933:2645..3948TCONS_00044510-exon-sc0005694-1510915933:2645..3948Clytia hemisphaericaexon
TCONS_00044510-exon-sc0005694-1510915933:1685..2020TCONS_00044510-exon-sc0005694-1510915933:1685..2020Clytia hemisphaericaexon
TCONS_00044510-exon-sc0005694-1491911889:2645..3948TCONS_00044510-exon-sc0005694-1491911889:2645..3948Clytia hemisphaericaexon
TCONS_00044510-exon-sc0005694-1491911889:1685..2020TCONS_00044510-exon-sc0005694-1491911889:1685..2020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005694supercontigsc0005694:1685..3948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0520639	0.278354	0.333817	0.302095	2.73372	1.64941	0.395742	0.712388	0.172781	0.485388	0.669356	0.176383	0.279493	0.0698777	0.123276	0.187416	0.540735	0.212158	0.357563	0.963001	1.8486	1.04849	0.231251	0.44353	1.80557	1.2246	0.242555	0.295146	0.175517	0.203827
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044510 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top