TCONS_00044497 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044497
Unique NameTCONS_00044497
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length272

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044497 ID=TCONS_00044497|Name=TCONS_00044497|organism=Clytia hemisphaerica|type=transcript|length=272bp
GTTAAATTGAGGTGAAAGAATTCAACCAATAAATTAATCTTTCCACAAAC
AAGCTAATGTGAATGTCAAGTTTAtatagaaaatatttactttacATAAT
ACCGATAGAAATCAATTACAAAGCCCCTAAAATATCTTGGTAACTGGAGA
CGTATCATTGACCCGGTGCAGAACCCTCccactagactagtaaactagtc
ggtaattacttataaccttataataaaactgtcaatcaaataatgtaaac
actaattaaatattcagtgCGC
Run BLAST on NCBI

transcript from alignment at sc0005686:1..272

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044497 ID=TCONS_00044497|Name=TCONS_00044497|organism=Clytia hemisphaerica|type=transcript|length=272bp|location=Sequence derived from alignment at sc0005686:1..272 (Clytia hemisphaerica)
GCGcactgaatatttaattagtgtttacattatttgattgacagttttat
tataaggttataagtaattaccgactagtttactagtctagtggGAGGGT
TCTGCACCGGGTCAATGATACGTCTCCAGTTACCAAGATATTTTAGGGGC
TTTGTAATTGATTTCTATCGGTATTATgtaaagtaaatattttctataTA
AACTTGACATTCACATTAGCTTGTTTGTGGAAAGATTAATTTATTGGTTG
AATTCTTTCACCTCAATTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028126XLOC_028126Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044497-exon-sc0005686-1491911889:1..272TCONS_00044497-exon-sc0005686-1491911889:1..272Clytia hemisphaericaexon
TCONS_00044497-exon-sc0005686-1510915933:1..272TCONS_00044497-exon-sc0005686-1510915933:1..272Clytia hemisphaericaexon
TCONS_00044497-exon-sc0005686-1575043694:1..272TCONS_00044497-exon-sc0005686-1575043694:1..272Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005686supercontigsc0005686:1..272 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.18419	0	5.56045	5.02479	4.34287	5.76288	7.54535	11.8348	2.75102	10.6708	6.76439	3.15963	0.350471	0.353704	0	0	0	0.82738	0	4.77373	0	0	3.04389	4.12386	1.16429	0	0.82531	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top