TCONS_00044467 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044467
Unique NameTCONS_00044467
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length248

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044467 ID=TCONS_00044467|Name=TCONS_00044467|organism=Clytia hemisphaerica|type=transcript|length=248bp
NNCGACCATATGTGTATCTCGGAGCACCACGAGGACGTTTAGAACGGACC
CAGCACGACAACATTTTCCGTGGAAGGCGATTCCAAGGCATGCGCATTAC
ATGCCCAGCCCATCTGAGCTGTTGACGACAAATGTAGGTGTCTATCGATT
CCATAGAAAGTTTATCGAGAAGATCAGATGTACGTTTACGATCGAGTAAA
GTAACACGACAAATACTTCTTACACACCGATGGTGAAATGCTCTCAAT
Run BLAST on NCBI

transcript from alignment at sc0005620:1060..1307

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044467 ID=TCONS_00044467|Name=TCONS_00044467|organism=Clytia hemisphaerica|type=transcript|length=248bp|location=Sequence derived from alignment at sc0005620:1060..1307 (Clytia hemisphaerica)
ATTGAGAGCATTTCACCATCGGTGTGTAAGAAGTATTTGTCGTGTTACTT
TACTCGATCGTAAACGTACATCTGATCTTCTCGATAAACTTTCTATGGAA
TCGATAGACACCTACATTTGTCGTCAACAGCTCAGATGGGCTGGGCATGT
AATGCGCATGCCTTGGAATCGCCTTCCACGGAAAATGTTGTCGTGCTGGG
TCCGTTCTAAACGTCCTCGTGGTGCTCCGAGATACACATATGGTCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028098XLOC_028098Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044467-exon-sc0005620-1491911889:1060..1307TCONS_00044467-exon-sc0005620-1491911889:1060..1307Clytia hemisphaericaexon
TCONS_00044467-exon-sc0005620-1510915933:1060..1307TCONS_00044467-exon-sc0005620-1510915933:1060..1307Clytia hemisphaericaexon
TCONS_00044467-exon-sc0005620-1575043694:1060..1307TCONS_00044467-exon-sc0005620-1575043694:1060..1307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005620supercontigsc0005620:1060..1307 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.31316	1.5433	0	0	17.7046	13.4921	14.5888	13.8072	5.33456	7.17723	1.6034	5.27006	4.84782	4.08937	1.34799	5.87466	0.594032	1.82659	0	0.880232	1.31214	1.11954	0.907298	0.178091	7.43556	5.47661	1.08504	4.53309	2.28119	0.0323258
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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