TCONS_00044466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044466
Unique NameTCONS_00044466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length562

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044466 ID=TCONS_00044466|Name=TCONS_00044466|organism=Clytia hemisphaerica|type=transcript|length=562bp
CGACGATATATGTATCGATTGTTCATCATGTGGTCGATCATACGATTTGA
CGTGTGTCGGATTGGACGAAAAAAGTGACGAGAGAGAACGAAATACATGG
ATGTGTAAAGTAAGTCAAACATCCGTCAAGAGTCTAAGTGACTCCTCGTG
TTGCTCTCAATGAGTAACCTTTTAACACCCTTAATGCggaaaataaagac
aaaaagcCACTGTACTGTATTTACAGATATAAATAGCCAAAAGTTCGCTC
ATTTAACAATCAAACACTTTTCTGAACACCGGAGTGGTTTGTTTGGCTCG
GTTACATCATCATTTTTAGATTCAAAAAATCAGTTTGATTTGAATGTCGA
GTGGGCTTTTGGATAGTCCACCGTTAGCACGATGTTCACCAACCAAAATT
ACTGACTGAAANGAGTGGGCTTTTGGATAGTCCACCGTTAGCACGATGTT
CACCAACCAAAATTACTGACTGAAAAATAATAGGTCCCAAccaacctcca
taactcgaaatttccataattcgaacagatTTGTGTTTCCCGTGAGTGTT
CGgattatggag
Run BLAST on NCBI

transcript from alignment at sc0005619:3337..3898-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044466 ID=TCONS_00044466|Name=TCONS_00044466|organism=Clytia hemisphaerica|type=transcript|length=562bp|location=Sequence derived from alignment at sc0005619:3337..3898- (Clytia hemisphaerica)
CGACGATATATGTATCGATTGTTCATCATGTGGTCGATCATACGATTTGA
CGTGTGTCGGATTGGACGAAAAAAGTGACGAGAGAGAACGAAATACATGG
ATGTGTAAAGTAAGTCAAACATCCGTCAAGAGTCTAAGTGACTCCTCGTG
TTGCTCTCAATGAGTAACCTTTTAACACCCTTAATGCGGAAAATAAAGAC
AAAAAGCCACTGTACTGTATTTACAGATATAAATAGCCAAAAGTTCGCTC
ATTTAACAATCAAACACTTTTCTGAACACCGGAGTGGTTTGTTTGGCTCG
GTTACATCATCATTTTTAGATTCAAAAAATCAGTTTGATTTGAATGTCGA
GTGGGCTTTTGGATAGTCCACCGTTAGCACGATGTTCACCAACCAAAATT
ACTGACTGAAANGAGTGGGCTTTTGGATAGTCCACCGTTAGCACGATGTT
CACCAACCAAAATTACTGACTGAAAAATAATAGGTCCCAACCAACCTCCA
TAACTCGAAATTTCCATAATTCGAACAGATTTGTGTTTCCCGTGAGTGTT
CGGATTATGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028097XLOC_028097Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044466-exon-sc0005619-1575043694:3337..3898TCONS_00044466-exon-sc0005619-1575043694:3337..3898Clytia hemisphaericaexon
TCONS_00044466-exon-sc0005619-1510915933:3337..3898TCONS_00044466-exon-sc0005619-1510915933:3337..3898Clytia hemisphaericaexon
TCONS_00044466-exon-sc0005619-1491911889:3337..3898TCONS_00044466-exon-sc0005619-1491911889:3337..3898Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005619supercontigsc0005619:3337..3898 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.118718	0.313981	0.364266	1.70592	0.406604	0.642608	0	0.120968	0.185397	0	0	0	0	0	0	0	0.171531	0.177287	0	0	0	0.165837	0	0	0	0.192607	0.147039	0.164336	0	0.125206
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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