TCONS_00044462 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044462
Unique NameTCONS_00044462
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length311

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044462 ID=TCONS_00044462|Name=TCONS_00044462|organism=Clytia hemisphaerica|type=transcript|length=311bp
gaCGTTATGCTTAATCTACTGTTCAAACTCTGGTTTAACTGAAAGCGAGC
TTCGAAAGCTTTTAGCACCATTGTATGATGACCAATCATTCGTCGAATTA
TTACCCAAGATGCATTGGGTGAAGATATACCGTCAATTGAAGAGCTTTTT
GATCAGCACGAGTAACGGGAAAGATGagatcttttatttttttcacagCT
CCGTTGAAGAGGTTAATAGTTCAGAGGAGatagagtttttataagatact
ttaataattggtcatttgaaataataaaaatgacgcgttctttagaaaaa
gtaacaaaatt
Run BLAST on NCBI

transcript from alignment at sc0005614:3577..3887

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044462 ID=TCONS_00044462|Name=TCONS_00044462|organism=Clytia hemisphaerica|type=transcript|length=311bp|location=Sequence derived from alignment at sc0005614:3577..3887 (Clytia hemisphaerica)
aattttgttactttttctaaagaacgcgtcatttttattatttcaaatga
ccaattattaaagtatcttataaaaactctatCTCCTCTGAACTATTAAC
CTCTTCAACGGAGctgtgaaaaaaataaaagatctCATCTTTCCCGTTAC
TCGTGCTGATCAAAAAGCTCTTCAATTGACGGTATATCTTCACCCAATGC
ATCTTGGGTAATAATTCGACGAATGATTGGTCATCATACAATGGTGCTAA
AAGCTTTCGAAGCTCGCTTTCAGTTAAACCAGAGTTTGAACAGTAGATTA
AGCATAACGtc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028094XLOC_028094Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044462-exon-sc0005614-1491911889:3577..3887TCONS_00044462-exon-sc0005614-1491911889:3577..3887Clytia hemisphaericaexon
TCONS_00044462-exon-sc0005614-1510915933:3577..3887TCONS_00044462-exon-sc0005614-1510915933:3577..3887Clytia hemisphaericaexon
TCONS_00044462-exon-sc0005614-1575043694:3577..3887TCONS_00044462-exon-sc0005614-1575043694:3577..3887Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005614supercontigsc0005614:3577..3887 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.41055	1.01715	0.39367	3.51277	0.469459	0.370952	0.447592	0	1.17196	1.77891	0	1.24046	1.72555	0.270008	3.44133	2.46714	1.14528	0.974582	0	0.943566	0.514323	0.988294	0.775434	0.902224	0.373297	0.667079	2.86049	2.54949	3.89533	2.58245
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044462 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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