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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044434 ID=TCONS_00044434|Name=TCONS_00044434|organism=Clytia hemisphaerica|type=transcript|length=1223bp
agcttcccaaagtgcactgtaagggtcgaattcagcaaagatgagaaaaa
ttgcactctaaaggtgtaaaatttcaaacatctgaccatattttgcctga
aaatgatcaaaaattttcaagaaaatgcaccgtaagggtcgatttctcgc
tcaaatttgctcaaattttgctaAACTTTCTCTAATAGTCCGATTTCTag
ggcctaattttgggccgcacgtatggttggttttgaatcgagtgccctGT
CCCAGgcaagacaaataaaaacataaaggTATAAAAATAGACAAGTACTA
GTAtaaatacattttttacaaGTAGCTCCAAAATTTAGGTCTTTACCCCT
CGCTGACTAGGTAAAAAACGGTCTCGAAAATGTCATTTCCTATACCGTAG
TTGTTCTTCGGCCAATAGAACAATTATTGAATTTATATCGTggcataaaa
aaaacaatatatttcAACTTCGAACAAAACAATACGATTCCGACACCAAG
ATAGAGGTTACAGACACCCTTTCTCcgcaaaaaaccaaaaaactgaaACT
TCTGAAAATCACTACTTCTTCGAGGCaagaaatgaaattcaaaaaaaata
aatgaagacAAAACaattaataaatattttagtaacAAAAATATGATCCT
AGTTAACACTTGTAAGATACAACGTATATATAAAATTAATAGTTATTCGA
GGAAGGCTTTCACTCATAATTTGAACAGTTTTGTAAACTTGAATATCCAA
TTAAGCCCACGGTCGTTGAAATTGAATATTCCCATCAGCCAAATATTGAT
CCATGCATAAATGGTGTCCTTCATTTGTACAAGCTTCAAATTTCGGTTTA
GGTTTGTACATCATCCAGCTCGTAGATGATCCTTGTTGTCTCCAATGTGG
AGAACGTTTTAGNGTTTAGGTTTGTACATCATCCAGCTCGTAGATGATCC
TTGTTGTCTCCAATGTGGAGAACGTTTTAGGATATCAAGCCCATACCGCC
CACGTGCAAATAGCCCTGGATTTGGTCTAAAAGCTGACCAATAATCTCCC
ATTCGAAGTATAGTATTAATTCCTTTGATTCGACTGCTCGGAAATGAGTA
TTTCAAAATTCGAACGATATAGGATATTTGGTTTGCATTCTTGTATATGT
CGTATGGGAATATGGTTACTCCCCAAGCTTCGAGTTTCCATTTCCCTTTG
TGAATTCCTATATAGCCACAAGA Run BLAST on NCBI transcript from alignment at sc0005564:2496..4249+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044434 ID=TCONS_00044434|Name=TCONS_00044434|organism=Clytia hemisphaerica|type=transcript|length=1754bp|location=Sequence derived from alignment at sc0005564:2496..4249+ (Clytia hemisphaerica)
agcttcccaaagtgcactgtaagggtcgaattcagcaaagatgagaaaaa
ttgcactctaaaggtgtaaaatttcaaacatctgaccatattttgcctga
aaatgatcaaaaattttcaagaaaatgcaccgtaagggtcgatttctcgc
tcaaatttgctcaaattttgctaAACTTTCTCTAATAGTCCGATTTCTag
ggcctaattttgggccgcacgtatggttggttttgaatcgagtgccctGT
CCCAGGCAagatagtctagcaagctagacgactaatttatacatagtaga
aataaagcaaaaagtaatgaatggaacaattttagtcgtctagaaacctt
tgtgcacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcgtctagaa
acctttgtgcacttactccaaacaaaagaaaagtgtcaatattgcaatta
taattttttcctgctcaaaataattcttgagaaaaaagatatgtgtggat
ttgtgtattgacagtttttcatttgagttgatttcgttttgaaagtttgt
tgttgcttgataaattgttttctcgctacgcaagtttctgcgtagctagc
ccctgtaatgctgtatctataaggctggaacaccggattcttccagtcgt
ttatacaaactaaatcccgtattattattattattagtattggtattatt
agtattacacgcattatcaacgactccagtctacaggcaagacaaataaa
aacataaaggTATAAAAATAGACAAGTACTAGTAtaaatacattttttac
aaGTAGCTCCAAAATTTAGGTCTTTACCCCTCGCTGACTAGGTAAAAAAC
GGTCTCGAAAATGTCATTTCCTATACCGTAGTTGTTCTTCGGCCAATAGA
ACAATTATTGAATTTATATCGTggcataaaaaaaacaatatatttcAACT
TCGAACAAAACAATACGATTCCGACACCAAGATAGAGGTTACAGACACCC
TTTCTCcgcaaaaaaccaaaaaactgaaACTTCTGAAAATCACTACTTCT
TCGAGGCaagaaatgaaattcaaaaaaaataaatgaagacAAAACaatta
ataaatattttagtaacAAAAATATGATCCTAGTTAACACTTGTAAGATA
CAACGTATATATAAAATTAATAGTTATTCGAGGAAGGCTTTCACTCATAA
TTTGAACAGTTTTGTAAACTTGAATATCCAATTAAGCCCACGGTCGTTGA
AATTGAATATTCCCATCAGCCAAATATTGATCCATGCATAAATGGTGTCC
TTCATTTGTACAAGCTTCAAATTTCGGTTTAGGTTTGTACATCATCCAGC
TCGTAGATGATCCTTGTTGTCTCCAATGTGGAGAACGTTTTAGNGTTTAG
GTTTGTACATCATCCAGCTCGTAGATGATCCTTGTTGTCTCCAATGTGGA
GAACGTTTTAGGATATCAAGCCCATACCGCCCACGTGCAAATAGCCCTGG
ATTTGGTCTAAAAGCTGACCAATAATCTCCCATTCGAAGTATAGTATTAA
TTCCTTTGATTCGACTGCTCGGAAATGAGTATTTCAAAATTCGAACGATA
TAGGATATTTGGTTTGCATTCTTGTATATGTCGTATGGGAATATGGTTAC
TCCCCAAGCTTCGAGTTTCCATTTCCCTTTGTGAATTCCTATATAGCCAC
AAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044434-exon-sc0005564-1491911889:2496..2750 | TCONS_00044434-exon-sc0005564-1491911889:2496..2750 | Clytia hemisphaerica | exon |
| TCONS_00044434-exon-sc0005564-1510915933:2496..2750 | TCONS_00044434-exon-sc0005564-1510915933:2496..2750 | Clytia hemisphaerica | exon |
| TCONS_00044434-exon-sc0005564-1575043694:2496..2750 | TCONS_00044434-exon-sc0005564-1575043694:2496..2750 | Clytia hemisphaerica | exon |
| TCONS_00044434-exon-sc0005564-1491911889:3282..4249 | TCONS_00044434-exon-sc0005564-1491911889:3282..4249 | Clytia hemisphaerica | exon |
| TCONS_00044434-exon-sc0005564-1510915933:3282..4249 | TCONS_00044434-exon-sc0005564-1510915933:3282..4249 | Clytia hemisphaerica | exon |
| TCONS_00044434-exon-sc0005564-1575043694:3282..4249 | TCONS_00044434-exon-sc0005564-1575043694:3282..4249 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005564 | supercontig | sc0005564:2496..4249 + |
Blast
The following BLAST results are available for this feature:
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