TCONS_00044433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044433
Unique NameTCONS_00044433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length613

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044433 ID=TCONS_00044433|Name=TCONS_00044433|organism=Clytia hemisphaerica|type=transcript|length=613bp
GTTATCACCTCAACACCCTCCAACCCTGGTAAACAAAGGTTCCATAAAAG
AGCACCAAGTGTTGGTCAAATATGCAACGGATGTGATACCTTTCATTATA
TAACAGATCTGGACGAGCAAGATTGGTCTAGTGTTGATcctataaataaa
aaagaagttgatccacttgtttttcaaagtttttgctCATGGATGGAAGA
TAATTGCCCGTTAAAGGATCACCAATTCTTGAGTATTGTGCACCGTGATG
ATGTAGTACCTTGCTTAAGGTTCCCTAATGAAGATTTATCAAAAGCCATT
TATAAGGCTGCTCAAAGTGATACGCTAGCTATTGAACCCATCAAATCTAA
ACCTAAAAAATGTGCTTTGACGTCTATCAATGGACCGTGTCCGTACCGGG
TACGTACTGGAGATTCAGATAATTGGTATCCAATTTCTGGTTCGTGTCGT
GCTCGGATTGTAACAGTgattgactttttgactttcttGAGGTATATCAG
GCAAGGTATCATTAAGAAAGATGTCAATGTTTTATACTGGGAAATGGTCA
AGAAACGAGCAGATATTAATTTAGCACGACTAGGATTGGAAAATCCTAAA
TAATTAGTGCTAN
Run BLAST on NCBI

protein sequence of TCONS_00044433-protein

>TCONS_00044433-protein ID=TCONS_00044433-protein|Name=TCONS_00044433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
VITSTPSNPGKQRFHKRAPSVGQICNGCDTFHYITDLDEQDWSSVDPINK
KEVDPLVFQSFCSWMEDNCPLKDHQFLSIVHRDDVVPCLRFPNEDLSKAI
YKAAQSDTLAIEPIKSKPKKCALTSINGPCPYRVRTGDSDNWYPISGSCR
ARIVTVIDFLTFLRYIRQGIIKKDVNVLYWEMVKKRADINLARLGLENPK
Run BLAST on NCBI

transcript from alignment at sc0005563:3642..4254

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044433 ID=TCONS_00044433|Name=TCONS_00044433|organism=Clytia hemisphaerica|type=transcript|length=613bp|location=Sequence derived from alignment at sc0005563:3642..4254 (Clytia hemisphaerica)
NTAGCACTAATTATTTAGGATTTTCCAATCCTAGTCGTGCTAAATTAATA
TCTGCTCGTTTCTTGACCATTTCCCAGTATAAAACATTGACATCTTTCTT
AATGATACCTTGCCTGATATACCTCaagaaagtcaaaaagtcaatcACTG
TTACAATCCGAGCACGACACGAACCAGAAATTGGATACCAATTATCTGAA
TCTCCAGTACGTACCCGGTACGGACACGGTCCATTGATAGACGTCAAAGC
ACATTTTTTAGGTTTAGATTTGATGGGTTCAATAGCTAGCGTATCACTTT
GAGCAGCCTTATAAATGGCTTTTGATAAATCTTCATTAGGGAACCTTAAG
CAAGGTACTACATCATCACGGTGCACAATACTCAAGAATTGGTGATCCTT
TAACGGGCAATTATCTTCCATCCATGagcaaaaactttgaaaaacaagtg
gatcaacttcttttttatttataggATCAACACTAGACCAATCTTGCTCG
TCCAGATCTGTTATATAATGAAAGGTATCACATCCGTTGCATATTTGACC
AACACTTGGTGCTCTTTTATGGAACCTTTGTTTACCAGGGTTGGAGGGTG
TTGAGGTGATAAC

Coding sequence (CDS) from alignment at sc0005563:3642..4254

>TCONS_00044433 ID=TCONS_00044433|Name=TCONS_00044433|organism=Clytia hemisphaerica|type=CDS|length=603bp|location=Sequence derived from alignment at sc0005563:3642..4254 (Clytia hemisphaerica)
TTATTTAGGATTTTCCAATCCTAGTCGTGCTAAATTAATATCTGCTCGTT
TCTTGACCATTTCCCAGTATAAAACATTGACATCTTTCTTAATGATACCT
TGCCTGATATACCTCaagaaagtcaaaaagtcaatcACTGTTACAATCCG
AGCACGACACGAACCAGAAATTGGATACCAATTATCTGAATCTCCAGTAC
GTACCCGGTACGGACACGGTCCATTGATAGACGTCAAAGCACATTTTTTA
GGTTTAGATTTGATGGGTTCAATAGCTAGCGTATCACTTTGAGCAGCCTT
ATAAATGGCTTTTGATAAATCTTCATTAGGGAACCTTAAGCAAGGTACTA
CATCATCACGGTGCACAATACTCAAGAATTGGTGATCCTTTAACGGGCAA
TTATCTTCCATCCATGagcaaaaactttgaaaaacaagtggatcaacttc
ttttttatttataggATCAACACTAGACCAATCTTGCTCGTCCAGATCTG
TTATATAATGAAAGGTATCACATCCGTTGCATATTTGACCAACACTTGGT
GCTCTTTTATGGAACCTTTGTTTACCAGGGTTGGAGGGTGTTGAGGTGAT
AAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028065XLOC_028065Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044433-exon-sc0005563-1491911889:3642..4254TCONS_00044433-exon-sc0005563-1491911889:3642..4254Clytia hemisphaericaexon
TCONS_00044433-exon-sc0005563-1510915933:3642..4254TCONS_00044433-exon-sc0005563-1510915933:3642..4254Clytia hemisphaericaexon
TCONS_00044433-exon-sc0005563-1575043694:3642..4254TCONS_00044433-exon-sc0005563-1575043694:3642..4254Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044433-proteinTCONS_00044433-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005563supercontigsc0005563:3642..4254 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.30299	3.68229	2.08803	0.680937	18.119	12.727	10.3869	12.3666	6.9561	10.7245	9.60871	7.13518	7.7677	7.27835	9.32474	7.59881	9.36111	11.6895	7.37469	6.93561	9.59434	13.0454	10.673	12.3579	14.4255	18.4281	15.0517	12.4653	21.4432	17.4778
Blast
[Close]
BLAST of TCONS_00044433 vs. Swiss-Prot (Human)
Match: RAB3I (Rab-3A-interacting protein OS=Homo sapiens GN=RAB3IP PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.692e-36
Identity = 78/227 (34.36%), Postives = 125/227 (55.07%), Query Frame = 1 
Query:    1 VITSTPSNP-------GKQRF---HKRAPSVGQICNGCDTFHYITDLDEQDWSSVDPINK--KEVDPLVFQSFCSW-----MEDNCPLKDHQFLSIVHRDDVVPCLRFPNEDLSKAIYKAAQSDTLAIEPIK--------------SKPKKCALTSINGPCPYRVRTGDSDNWYPISGSCRARIVTVIDFLTFLRYIRQGIIK-KDVNVLYWEMVKKRADINLARLG 585
            V++S+P++P       GK  F   H R  S     +G            QD S + PI K  KE D  ++  F  W     M+  CP     FL  ++++D+ PCL F   +L+ A+ +A +++TL+IEP+                 PKKCALT  +  C +R++ GDS N+Y IS  CR RI +V +F T++RYI+QG++K +DV+ ++WE+++ R +++LA+LG
Sbjct:  259 VLSSSPTSPTQEPLPGGKTPFKKGHTRNKSTSSAMSG----------SHQDLSVIQPIVKDCKEADLSLYNEFRLWKDEPTMDRTCP-----FLDKIYQEDIFPCLTFSKSELASAVLEAVENNTLSIEPVGLQPIRFVKASAVECGGPKKCALTGQSKSCKHRIKLGDSSNYYYISPFCRYRITSVCNFFTYIRYIQQGLVKQQDVDQMFWEVMQLRKEMSLAKLG 470
The following BLAST results are available for this feature:
BLAST of TCONS_00044433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB3I5.692e-3634.36Rab-3A-interacting protein OS=Homo sapiens GN=RAB3... [more]
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