|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044429 ID=TCONS_00044429|Name=TCONS_00044429|organism=Clytia hemisphaerica|type=transcript|length=803bp
CGCTGTCTTCAAAACAGTTCTCTGTCTCTTTGAGTGTAGGTACtagattc
aattttttgttttgtttttgtttttcagaatttgatCAAGATGGTTGAAG
GAAAGAAAGTTGGAGTTTTGATTGCATGTGCTGCGGTTTTCATATTGTTA
TCGGCTTCTACTGGTGGTGTTGGATGGTCAAATTACGAGGcATTGTTGGA
TGGAGGGTCTGTCGAATTAAAAATGGGTTTATTCAGATCATGCCGAACTG
AAAAgagtttttcaactttttcaatcaGCAATatttgttcagatttcaaa
agtgaaCAGCTCTCTTCCAAGCATAAGGCGATTCAAGCATTCATGATCTT
GTCTGTGTTAGCATCCATTGCAGCTGTCGTTTGTGTTATGTTCATTGACA
AAATCTCTGCTAAGCTTATCTCCTGGCTTATGATTGATGCTTTCATTTCG
GCATTGATTGGTTTGGCAATCTTCACTGAGAGTAAAGAAAACAGTATTAT
TGACATTTATGACTATGGTTGGGCCTATGCATTAGGGTGGGTTGGCGCTA
TAGCCGCCCTGATTGTTGGTGTAGTGGTTTCTGTAGCTTTTGGATCATCT
TAATGAAATCACCGTTGATTTTGGCtgatacttttttttactttttatcc
tAGAATGTTACTTTAAgcatataaaaaaacacaacattATACTCTTTATA
CTCTATAATATTCGTGAACGTAATTTTTCTCCAACCTGTCTTTGGCCCTC
AATATTTTGCAGTTCTCCAGGATAGAGGACACTTAAATTATTGCCAGAGT
GGT Run BLAST on NCBI protein sequence of TCONS_00044429-protein >TCONS_00044429-protein ID=TCONS_00044429-protein|Name=TCONS_00044429-protein|organism=Clytia hemisphaerica|type=polypeptide|length=170bp
MVEGKKVGVLIACAAVFILLSASTGGVGWSNYEALLDGGSVELKMGLFRS
CRTEKSFSTFSISNICSDFKSEQLSSKHKAIQAFMILSVLASIAAVVCVM
FIDKISAKLISWLMIDAFISALIGLAIFTESKENSIIDIYDYGWAYALGW
VGAIAALIVGVVVSVAFGSS Run BLAST on NCBI transcript from alignment at sc0005560:34..1050+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044429 ID=TCONS_00044429|Name=TCONS_00044429|organism=Clytia hemisphaerica|type=transcript|length=1017bp|location=Sequence derived from alignment at sc0005560:34..1050+ (Clytia hemisphaerica)
CGCTGTCTTCAAAACAGTTCTCTGTCTCTTTGAGTGTAGGTACtagattc
aattttttgttttgtttttgtttttcagaatttgatCAAGATGGTTGAAG
GAAAGAAAGTTGGAGTTTTGATTGCATGTGCTGCGGTTTTCATATTGTTA
TCGGCTTCTACTGGTGGTGTTGGATGGTCAAATTACGAGGGTAAGACCaa
aaaagtcaatttcaaaattaaactaATTTTACAACTATAGTTTTGGTTCA
AAAGGTTAATATTTCTATCCACTAGTTTGTCGTCTATTAAATTCCATTCA
GAGCCGCTGTTTGTGGTTCGACGCTCTTTAGAGAGAGCCACCTATTGAAA
GTCAACACTAAAGAAAGAATACAGTTacaatttcgaaatttttatttcat
ttagcATTGTTGGATGGAGGGTCTGTCGAATTAAAAATGGGTTTATTCAG
ATCATGCCGAACTGAAAAgagtttttcaactttttcaatcaGCAATattt
gttcagatttcaaaagtgaaCAGCTCTCTTCCAAGCATAAGGCGATTCAA
GCATTCATGATCTTGTCTGTGTTAGCATCCATTGCAGCTGTCGTTTGTGT
TATGTTCATTGACAAAATCTCTGCTAAGCTTATCTCCTGGCTTATGATTG
ATGCTTTCATTTCGGCATTGATTGGTTTGGCAATCTTCACTGAGAGTAAA
GAAAACAGTATTATTGACATTTATGACTATGGTTGGGCCTATGCATTAGG
GTGGGTTGGCGCTATAGCCGCCCTGATTGTTGGTGTAGTGGTTTCTGTAG
CTTTTGGATCATCTTAATGAAATCACCGTTGATTTTGGCtgatacttttt
tttactttttatcctAGAATGTTACTTTAAgcatataaaaaaacacaaca
ttATACTCTTTATACTCTATAATATTCGTGAACGTAATTTTTCTCCAACC
TGTCTTTGGCCCTCAATATTTTGCAGTTCTCCAGGATAGAGGACACTTAA
ATTATTGCCAGAGTGGT Coding sequence (CDS) from alignment at sc0005560:34..1050+ >TCONS_00044429 ID=TCONS_00044429|Name=TCONS_00044429|organism=Clytia hemisphaerica|type=CDS|length=1026bp|location=Sequence derived from alignment at sc0005560:34..1050+ (Clytia hemisphaerica)
ATGGTTGAAGGAAAGAAAGTTGGAGTTTTGATTGCATGTGCTGCGGTTTT
CATATTGTTATCGGCTTCTACTGGTGGTGTTGGATGGTCAAATTACGAGG
cATTGTTGGATGGAGGGTCTGTCGAATTAAAAATGGGTTTATTCAGATCA
TGCCGAACTGAAAAgagtttttcaactttttcaatcaGCAATatttgttc
agatttcaaaagtgaaCAGCTCTCTTCCAAGCATAAGGCGATTCAAGCAT
TCATGATCTTGTCTGTGTTAGCATCCATTGCAGCTGTCGTTTGTGTTATG
TTCATTGACAAAATCTCTGCTAAGCTTATCTCCTGGCTTATGATTGATGC
TTTCATTTCGGCATTGATTGGTTTGGCAATCTTCACTGAGAGTAAAGAAA
ACAGTATTATTGACATTTATGACTATGGTTGGGCCTATGCATTAGGGTGG
GTTGGCGCTATAGCCGCCCTGATTGTTGGTGTAGTGGTTTCTGTAGCTTT
TGGATCATCTTAAATGGTTGAAGGAAAGAAAGTTGGAGTTTTGATTGCAT
GTGCTGCGGTTTTCATATTGTTATCGGCTTCTACTGGTGGTGTTGGATGG
TCAAATTACGAGGcATTGTTGGATGGAGGGTCTGTCGAATTAAAAATGGG
TTTATTCAGATCATGCCGAACTGAAAAgagtttttcaactttttcaatca
GCAATatttgttcagatttcaaaagtgaaCAGCTCTCTTCCAAGCATAAG
GCGATTCAAGCATTCATGATCTTGTCTGTGTTAGCATCCATTGCAGCTGT
CGTTTGTGTTATGTTCATTGACAAAATCTCTGCTAAGCTTATCTCCTGGC
TTATGATTGATGCTTTCATTTCGGCATTGATTGGTTTGGCAATCTTCACT
GAGAGTAAAGAAAACAGTATTATTGACATTTATGACTATGGTTGGGCCTA
TGCATTAGGGTGGGTTGGCGCTATAGCCGCCCTGATTGTTGGTGTAGTGG
TTTCTGTAGCTTTTGGATCATCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044429-exon-sc0005560-1491911889:34..223 | TCONS_00044429-exon-sc0005560-1491911889:34..223 | Clytia hemisphaerica | exon |
| TCONS_00044429-exon-sc0005560-1510915933:34..223 | TCONS_00044429-exon-sc0005560-1510915933:34..223 | Clytia hemisphaerica | exon |
| TCONS_00044429-exon-sc0005560-1575043694:34..223 | TCONS_00044429-exon-sc0005560-1575043694:34..223 | Clytia hemisphaerica | exon |
| TCONS_00044429-exon-sc0005560-1491911889:438..1050 | TCONS_00044429-exon-sc0005560-1491911889:438..1050 | Clytia hemisphaerica | exon |
| TCONS_00044429-exon-sc0005560-1510915933:438..1050 | TCONS_00044429-exon-sc0005560-1510915933:438..1050 | Clytia hemisphaerica | exon |
| TCONS_00044429-exon-sc0005560-1575043694:438..1050 | TCONS_00044429-exon-sc0005560-1575043694:438..1050 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005560 | supercontig | sc0005560:34..1050 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
|
