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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044426 ID=TCONS_00044426|Name=TCONS_00044426|organism=Clytia hemisphaerica|type=transcript|length=1233bp
GTTTATTGACTTGTCTTCTAAATTTCGGACAAAGCGTGGTTTTAAATTGA
CATACGGATATTTCGCATCAGAAATCCGCTTGTAAATCCTATATAATCTT
TTCTGCTTCATAAAAGGAGTTTTATATGCCCCACCAGCCGGCAACTTCTT
GATCACAATTTCGAAAGCGTCTCTTAAAGAGTGGCTGAAAATCGTAGATA
CCTTTTCGACATCTCTCATTTTCGAGGACTGTGGGTAAACGTCAATCAAA
CTCTGGTCCAATTCGTTTTCACTTAACAAATCTGTCAACAGGTCGAAATC
TTGAATCTTCTTATCAAAAATGATCGATTTTGTAAGACGTTTGCTTTCGT
TGGAAAGATATTTCAAATAGCCCTTTTGGAATATAATCAAATCATTTTTT
GTAGTAAGGTTATTAGATATTTGAACTTTACTTCCTGTTGAGATCCAAGT
TAAAGTCTCGTTGTTCGGTTTTAAGGCACTAACCAACTGGACTAGCTCTC
CAAAAGCATTTTCCGTTTGACTGTTTAAAACAAGAAAAATGTTGGAGGTG
TGAGAAAACATGATTGTTGATTTCAATTTATCTTTGGTGATGTTATTTGT
TGGTATATCAAGACGGGCAGTTATACAAACATTCATTTCTGATAGTTTCT
GGTCCAGAAAATATTTAAATTCAAGCTGTTCCATTGATTTATGTTCTTCT
TCGATAATATTAAGTTCCTTTACGTTTAAGTCTCTGATCAACTTTATAAC
ACTCTCTCCAAGATGCTGAAGGTTGATTTTACCAAATGTCACACCATATG
CTTTCCCGTTGGTCTGACCTTCTTCATTGGTAATTGGAAAGTGAGCAAAT
GTGAAAAGCGGTATATTACCAGCTAATAAAGCATATCTAGCATTGTAAAG
TCTCCAACTAACAATTGTGGTAAAAACGCTTAAAACATAGTAAGGTCTGT
TCACCAATTTTGTTAAAAGAATGTCCAAGAAAACTGATGTACCGCCTTTA
GAAAAGCATGTAGCTTCATAAATCAAAGATCCGATTTGGTGTGGTTGGTT
CTGAGATGACCGAACCAGTTCAAGGGTTGTCTGTTGGAAAATTTCACGCG
CGACAACACCTCTATCTGTGTCTCAGACAACTGAAAACTCCAACCAgtaa
aaataaaccagccgaggctggaaggtcagccaatagagcttagctagata
gctttaataagtgggttaacagatgtaagagat Run BLAST on NCBI protein sequence of TCONS_00044426-protein >TCONS_00044426-protein ID=TCONS_00044426-protein|Name=TCONS_00044426-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MEQLEFKYFLDQKLSEMNVCITARLDIPTNNITKDKLKSTIMFSHTSNIF
LVLNSQTENAFGELVQLVSALKPNNETLTWISTGSKVQISNNLTTKNDLI
IFQKGYLKYLSNESKRLTKSIIFDKKIQDFDLLTDLLSENELDQSLIDVY
PQSSKMRDVEKVSTIFSHSLRDAFEIVIKKLPAGGAYKTPFMKQKRLYRI
YKRISDAKYPYVNLKPRFVRNLEDKSIN Run BLAST on NCBI transcript from alignment at sc0005554:6..1238 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044426 ID=TCONS_00044426|Name=TCONS_00044426|organism=Clytia hemisphaerica|type=transcript|length=1233bp|location=Sequence derived from alignment at sc0005554:6..1238 (Clytia hemisphaerica)
atctcttacatctgttaacccacttattaaagctatctagctaagctcta
ttggctgaccttccagcctcggctggtttatttttacTGGTTGGAGTTTT
CAGTTGTCTGAGACACAGATAGAGGTGTTGTCGCGCGTGAAATTTTCCAA
CAGACAACCCTTGAACTGGTTCGGTCATCTCAGAACCAACCACACCAAAT
CGGATCTTTGATTTATGAAGCTACATGCTTTTCTAAAGGCGGTACATCAG
TTTTCTTGGACATTCTTTTAACAAAATTGGTGAACAGACCTTACTATGTT
TTAAGCGTTTTTACCACAATTGTTAGTTGGAGACTTTACAATGCTAGATA
TGCTTTATTAGCTGGTAATATACCGCTTTTCACATTTGCTCACTTTCCAA
TTACCAATGAAGAAGGTCAGACCAACGGGAAAGCATATGGTGTGACATTT
GGTAAAATCAACCTTCAGCATCTTGGAGAGAGTGTTATAAAGTTGATCAG
AGACTTAAACGTAAAGGAACTTAATATTATCGAAGAAGAACATAAATCAA
TGGAACAGCTTGAATTTAAATATTTTCTGGACCAGAAACTATCAGAAATG
AATGTTTGTATAACTGCCCGTCTTGATATACCAACAAATAACATCACCAA
AGATAAATTGAAATCAACAATCATGTTTTCTCACACCTCCAACATTTTTC
TTGTTTTAAACAGTCAAACGGAAAATGCTTTTGGAGAGCTAGTCCAGTTG
GTTAGTGCCTTAAAACCGAACAACGAGACTTTAACTTGGATCTCAACAGG
AAGTAAAGTTCAAATATCTAATAACCTTACTACAAAAAATGATTTGATTA
TATTCCAAAAGGGCTATTTGAAATATCTTTCCAACGAAAGCAAACGTCTT
ACAAAATCGATCATTTTTGATAAGAAGATTCAAGATTTCGACCTGTTGAC
AGATTTGTTAAGTGAAAACGAATTGGACCAGAGTTTGATTGACGTTTACC
CACAGTCCTCGAAAATGAGAGATGTCGAAAAGGTATCTACGATTTTCAGC
CACTCTTTAAGAGACGCTTTCGAAATTGTGATCAAGAAGTTGCCGGCTGG
TGGGGCATATAAAACTCCTTTTATGAAGCAGAAAAGATTATATAGGATTT
ACAAGCGGATTTCTGATGCGAAATATCCGTATGTCAATTTAAAACCACGC
TTTGTCCGAAATTTAGAAGACAAGTCAATAAAC Coding sequence (CDS) from alignment at sc0005554:6..1238 >TCONS_00044426 ID=TCONS_00044426|Name=TCONS_00044426|organism=Clytia hemisphaerica|type=CDS|length=684bp|location=Sequence derived from alignment at sc0005554:6..1238 (Clytia hemisphaerica)
ATGGAACAGCTTGAATTTAAATATTTTCTGGACCAGAAACTATCAGAAAT
GAATGTTTGTATAACTGCCCGTCTTGATATACCAACAAATAACATCACCA
AAGATAAATTGAAATCAACAATCATGTTTTCTCACACCTCCAACATTTTT
CTTGTTTTAAACAGTCAAACGGAAAATGCTTTTGGAGAGCTAGTCCAGTT
GGTTAGTGCCTTAAAACCGAACAACGAGACTTTAACTTGGATCTCAACAG
GAAGTAAAGTTCAAATATCTAATAACCTTACTACAAAAAATGATTTGATT
ATATTCCAAAAGGGCTATTTGAAATATCTTTCCAACGAAAGCAAACGTCT
TACAAAATCGATCATTTTTGATAAGAAGATTCAAGATTTCGACCTGTTGA
CAGATTTGTTAAGTGAAAACGAATTGGACCAGAGTTTGATTGACGTTTAC
CCACAGTCCTCGAAAATGAGAGATGTCGAAAAGGTATCTACGATTTTCAG
CCACTCTTTAAGAGACGCTTTCGAAATTGTGATCAAGAAGTTGCCGGCTG
GTGGGGCATATAAAACTCCTTTTATGAAGCAGAAAAGATTATATAGGATT
TACAAGCGGATTTCTGATGCGAAATATCCGTATGTCAATTTAAAACCACG
CTTTGTCCGAAATTTAGAAGACAAGTCAATAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044426-exon-sc0005554-1491911889:6..1238 | TCONS_00044426-exon-sc0005554-1491911889:6..1238 | Clytia hemisphaerica | exon |
| TCONS_00044426-exon-sc0005554-1510915933:6..1238 | TCONS_00044426-exon-sc0005554-1510915933:6..1238 | Clytia hemisphaerica | exon |
| TCONS_00044426-exon-sc0005554-1575043694:6..1238 | TCONS_00044426-exon-sc0005554-1575043694:6..1238 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005554 | supercontig | sc0005554:6..1238 . |
Blast
The following BLAST results are available for this feature:
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