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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044400 ID=TCONS_00044400|Name=TCONS_00044400|organism=Clytia hemisphaerica|type=transcript|length=1634bp
CAGCTTGTGGCGTCGCTTGGAATCGACTAATTCCAACATTGGGCGGACTG
TTGTACCATTGCTTTTACATTGTGCATCGTTACCGTACGGTGCTGATCAT
CTTTGCCAATGTATGGAATCTGATTTCACAAATGATGATTGGAAAACAAG
ATTCTCTGCAGTTGACAAAGTTGGATTATTATGTCAGTTTATTGAAGCAC
GGAACATCAAAGAAGGAAAGGCGAAATCAGCTGTCGTCCATGCTGTTTGT
TACATGACCATTGCTATGGAGGACATCAATAGTACTGTGTCTACCCGAGC
AAGAAGCGTACTCCAATCCATCAAAATCTCTTCACTGAAGCCTGTCTACG
GATATATGAAAGAACACTTTGTGAAAGTTGTGGAAGATCGTTTGGTGTTA
CTGAACGCTTACCGGACGCTCCACATGGTCATACCAGAGTCGTCACCTTT
GAGTGGTACACTACTGCTGGACCTTTTGAAACTGGCTAAATATGTGGATG
ATAAAACTATTGAAACTCATATCAAGAAAGAATTACAAAGAGGCAGTACT
ATAATGGATACTTCTATTGATCCCGGTAAGAATGATACTAATTGGTAAAA
AGACGTTTTCAAATAAGATGGTAGCTTAACTGTGtcaatataataataaa
aaactacCGGTAACCGAGGCACTATAATGGATACGTCTATTAACCCGAGT
GATAATGATATTTTAAGAGCCCATAATAATTCATAAACTCGATACTTGGA
GTCGTTGTTTTTACACAGGGTTTAGTTACTTCGACCGTTTTCATTTTGCG
TCTAATgatcagtggcgttgtgggaaaatttttctggaggggccaaagtc
aaatttttttaaatgccccccccccccaattttccaaagcagtgccccca
cccaccagtttctaaacttttactaattcatttgcctaggcataataagg
aaggaaatatttagtggggaagagtagatatatctttgatgaatggaaaa
gggaaaaacaggccccaccatggttagggccgactagaaaattttgaaaa
tcgtctgctaagataccctaaatcactagataaaaatagacaaatttgac
acttgctagagtgaaaagaaagttaaagaaGCAATGTGTAAtgtgagcga
agcgagcgaaaaaatttatgttttatgatttcaatattgttgtcagcaaa
ttggtcttggggcgcagttagattttcatttaataatgctttattgtaca
caaaaaaaacttttaaattagctagattgcaaagaagttaccaattaact
gtattgcgagcgaagtgagcgaaaaaaattgcaatcatctcagtaaaatt
ggttcTGGGGCACAATataaggcgcataaagtatgatttttaagattggg
gcgtttaaaaaaatctcttttgacgccccttgctcttcgacgccccttca
aaaaagctccgctggggggggggggggNtctcttttggcgccccttgctc
ttcggcgccccttcaaaaaagctccgctgggggggccatggcccccccgg
ccccccctgccacaacgccactggtcTTTGGCAAGGGGCCACCTACTGAG
CTTAGGGGGTCTAATATTTTACAAACTGAAATGG Run BLAST on NCBI protein sequence of TCONS_00044400-protein >TCONS_00044400-protein ID=TCONS_00044400-protein|Name=TCONS_00044400-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
SLWRRLESTNSNIGRTVVPLLLHCASLPYGADHLCQCMESDFTNDDWKTR
FSAVDKVGLLCQFIEARNIKEGKAKSAVVHAVCYMTIAMEDINSTVSTRA
RSVLQSIKISSLKPVYGYMKEHFVKVVEDRLVLLNAYRTLHMVIPESSPL
SGTLLLDLLKLAKYVDDKTIETHIKKELQRGSTIMDTSIDPGKNDTNW Run BLAST on NCBI transcript from alignment at sc0005518:302..3229+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044400 ID=TCONS_00044400|Name=TCONS_00044400|organism=Clytia hemisphaerica|type=transcript|length=2928bp|location=Sequence derived from alignment at sc0005518:302..3229+ (Clytia hemisphaerica)
CAGCTTGTGGCGTCGCTTGGAATCGACTAATTCCAACATTGGGCGGACTG
TTGTACCATTGCTTTTACATTGTGCATCGTTACCGTACGGTGCTGATCAT
CTTTGCCAATGTATGGAATCTGATTTCACAAATGATGATTGGAAAACAAG
ATTCTCTGCAGGTTTCgatctatttttcttttcttttcttgttttcCGTA
ATCATGAGAATCTAAACACCCCtaaacaccccttctcacagacccggtag
gatttttttagatagtgggggtaaaaataacggaccaaaactcaatgggg
attgattttcccatgtttttttaatggctggggatttgaattccattgtt
ttcggcAATTTTTCTGGTGGTAAGGGGTCCCggtgagtctgtgagaaggg
ggtgacGTATAATGACGTGACCGAAAAAAGACtgggtaccttatcgggga
aaattttcgtcggggaaaaatattcgtcacttggccaaaatttcgtcact
tttccccgacgaagaaTCCCCCGATTAGGTATTTGCcaataattttgaat
ttcaacaaTGAAGTAGTGGGAAACGCCGGGActattttgggtgcttccgt
ataataAAAAACATACATGCATATACCATTCTAGTTGACAAAGTTGGATT
ATTATGTCAGTTTATTGAAGCACGGAACATCAAAGAAGGAAAGGCGAAAT
CAGCTGTCGTCCATGCTGTTTGTTACATGACCATTGCTATGGAGGACATC
AATAGTACTGTGTCTACCCGAGCAAGAAGCGTACTCCAATCCATCAAAAT
CTCTTCACTGAAGGTTtgtccactgacctttatattcatgatatgcacca
ctgcaatgacttcacgaaattatgcaatttttctgtttttgttccaccca
atacgtcactttttctattgtttaagtgacgcattgggtgaaattttttt
aaagttttcagaagactctccagtggtgcatatcatgaataccctGGGCA
AAGTCTTTCAATCCTggcaaagcaaaatctttgatcgcagttttttgaaa
agtggtaccctaatggcggcggcactactcaatagcggtgcatcgagagc
gctagatctactttccataaaaaacttttgatgatgtagcgctgttagac
gttaatttttaacactgcaatggcttctttacgggtaccaattcaaaaaa
gaacttcgatcaaagatggtggatatagcttggtccagggatatataaag
gtcagtgggacAAAGTCTTTCAATCCTGGCAAAGTAAAATCTTTGATCGc
agttttttagaaatttgttccctaatggtagcactactcaatagcggtgt
aaatgcatcgagagcgctagattcACTTTTCCTAGAATGCTTTTGAGGAT
GCAGCGCTgttaaaaacattaatttttattattgcaATGGGAgataccac
tttcaaaaaaaactttgatttaaatcaacattttcttagTAGCCATTTAA
GAAATTTGTGGCCAGGTTTGTTCTCAATTCGTTATTTCCAAAATTGAGCC
TCATCTtcttattttcataaaattgttcTGATAGAATTTCTCTTAATAAA
CAAAAGtgtgaaaacttttgaaatctttttacaGCCTGTCTACGGATATA
TGAAAGAACACTTTGTGAAAGTTGTGGAAGATCGTTTGGTGTTACTGAAC
GCTTACCGGACGCTCCACATGGTCATACCAGAGTCGTCACCTTTGAGTGG
TACACTACTGCTGGACCTTTTGAAACTGGCTAAATATGTGGATGATAAAA
CTATTGAAACTCATATCAAGAAAGAATTACAAAGAGGCAGTACTATAATG
GATACTTCTATTGATCCCGGTAAGAATGATACTAATTGGTAAAAAGACGT
TTTCAAATAAGATGGTAGCTTAACTGTGtcaatataataataaaaaacta
cCGGTAACCGAGGCACTATAATGGATACGTCTATTAACCCGAGTGATAAT
GATATTTTAAGAGCCCATAATAATTCATAAACTCGATACTTGGAGTCGTT
GTTTTTACACAGGGTTTAGTTACTTCGACCGTTTTCATTTTGCGTCTAAT
gatcagtggcgttgtgggaaaatttttctggaggggccaaagtcaaattt
ttttaaatgccccccccccccaattttccaaagcagtgcccccacccacc
agtttctaaacttttactaattcatttgcctaggcataataaggaaggaa
atatttagtggggaagagtagatatatctttgatgaatggaaaagggaaa
aacaggccccaccatggttagggccgactagaaaattttgaaaatcgtct
gctaagataccctaaatcactagataaaaatagacaaatttgacacttgc
tagagtgaaaagaaagttaaagaaGCAATGTGTAAtgtgagcgaagcgag
cgaaaaaatttatgttttatgatttcaatattgttgtcagcaaattggtc
ttggggcgcagttagattttcatttaataatgctttattgtacacaaaaa
aaacttttaaattagctagattgcaaagaagttaccaattaactgtattg
cgagcgaagtgagcgaaaaaaattgcaatcatctcagtaaaattggttcT
GGGGCACAATataaggcgcataaagtatgatttttaagattggggcgttt
aaaaaaatctcttttgacgccccttgctcttcgacgccccttcaaaaaag
ctccgctggggggggggggggNtctcttttggcgccccttgctcttcggc
gccccttcaaaaaagctccgctgggggggccatggcccccccggcccccc
ctgccacaacgccactggtcTTTGGCAAGGGGCCACCTACTGAGCTTAGG
GGGTCTAATATTTTACAAACTGAAATGG Coding sequence (CDS) from alignment at sc0005518:302..3229+ >TCONS_00044400 ID=TCONS_00044400|Name=TCONS_00044400|organism=Clytia hemisphaerica|type=CDS|length=1791bp|location=Sequence derived from alignment at sc0005518:302..3229+ (Clytia hemisphaerica)
AGCTTGTGGCGTCGCTTGGAATCGACTAATTCCAACATTGGGCGGACTGT
TGTACCATTGCTTTTACATTGTGCATCGTTACCGTACGGTGCTGATCATC
TTTGCCAATGTATGGAATCTGATTTCACAAATGATGATTGGAAAACAAGA
TTCTCTGCAGTTGACAAAGTTGGATTATTATGTCAGTTTATTGAAGCACG
GAACATCAAAGAAGGAAAGGCGAAATCAGCTGTCGTCCATGCTGTTTGTT
ACATGACCATTGCTATGGAGGACATCAATAGTACTGTGTCTACCCGAGCA
AGAAGCGTACTCCAATCCATCAAAATCTCTTCACTGAAGCCTGTCTACGG
ATATATGAAAGAACACTTTGTGAAAGTTGTGGAAGATCGTTTGGTGTTAC
TGAACGCTTACCGGACGCTCCACATGGTCATACCAGAGTCGTCACCTTTG
AGTGGTACACTACTGCTGGACCTTTTGAAACTGGCTAAATATGTGGATGA
TAAAACTATTGAAACTCATATCAAGAAAGAATTACAAAGAGGCAGTACTA
TAATGGATACTTCTATTGATCCCGGTAAGAATGATACTAATTGGTAAAGC
TTGTGGCGTCGCTTGGAATCGACTAATTCCAACATTGGGCGGACTGTTGT
ACCATTGCTTTTACATTGTGCATCGTTACCGTACGGTGCTGATCATCTTT
GCCAATGTATGGAATCTGATTTCACAAATGATGATTGGAAAACAAGATTC
TCTGCAGTTGACAAAGTTGGATTATTATGTCAGTTTATTGAAGCACGGAA
CATCAAAGAAGGAAAGGCGAAATCAGCTGTCGTCCATGCTGTTTGTTACA
TGACCATTGCTATGGAGGACATCAATAGTACTGTGTCTACCCGAGCAAGA
AGCGTACTCCAATCCATCAAAATCTCTTCACTGAAGCCTGTCTACGGATA
TATGAAAGAACACTTTGTGAAAGTTGTGGAAGATCGTTTGGTGTTACTGA
ACGCTTACCGGACGCTCCACATGGTCATACCAGAGTCGTCACCTTTGAGT
GGTACACTACTGCTGGACCTTTTGAAACTGGCTAAATATGTGGATGATAA
AACTATTGAAACTCATATCAAGAAAGAATTACAAAGAGGCAGTACTATAA
TGGATACTTCTATTGATCCCGGTAAGAATGATACTAATTGGTAAAGCTTG
TGGCGTCGCTTGGAATCGACTAATTCCAACATTGGGCGGACTGTTGTACC
ATTGCTTTTACATTGTGCATCGTTACCGTACGGTGCTGATCATCTTTGCC
AATGTATGGAATCTGATTTCACAAATGATGATTGGAAAACAAGATTCTCT
GCAGTTGACAAAGTTGGATTATTATGTCAGTTTATTGAAGCACGGAACAT
CAAAGAAGGAAAGGCGAAATCAGCTGTCGTCCATGCTGTTTGTTACATGA
CCATTGCTATGGAGGACATCAATAGTACTGTGTCTACCCGAGCAAGAAGC
GTACTCCAATCCATCAAAATCTCTTCACTGAAGCCTGTCTACGGATATAT
GAAAGAACACTTTGTGAAAGTTGTGGAAGATCGTTTGGTGTTACTGAACG
CTTACCGGACGCTCCACATGGTCATACCAGAGTCGTCACCTTTGAGTGGT
ACACTACTGCTGGACCTTTTGAAACTGGCTAAATATGTGGATGATAAAAC
TATTGAAACTCATATCAAGAAAGAATTACAAAGAGGCAGTACTATAATGG
ATACTTCTATTGATCCCGGTAAGAATGATACTAATTGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044400-exon-sc0005518-1491911889:302..462 | TCONS_00044400-exon-sc0005518-1491911889:302..462 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1510915933:302..462 | TCONS_00044400-exon-sc0005518-1510915933:302..462 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1575043694:302..462 | TCONS_00044400-exon-sc0005518-1575043694:302..462 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1491911889:936..1114 | TCONS_00044400-exon-sc0005518-1491911889:936..1114 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1510915933:936..1114 | TCONS_00044400-exon-sc0005518-1510915933:936..1114 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1575043694:936..1114 | TCONS_00044400-exon-sc0005518-1575043694:936..1114 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1491911889:1936..3229 | TCONS_00044400-exon-sc0005518-1491911889:1936..3229 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1510915933:1936..3229 | TCONS_00044400-exon-sc0005518-1510915933:1936..3229 | Clytia hemisphaerica | exon |
| TCONS_00044400-exon-sc0005518-1575043694:1936..3229 | TCONS_00044400-exon-sc0005518-1575043694:1936..3229 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005518 | supercontig | sc0005518:302..3229 + |
Blast
BLAST of TCONS_00044400 vs. Swiss-Prot (Human)
Match: UNC79 (Protein unc-79 homolog OS=Homo sapiens GN=UNC79 PE=2 SV=4) HSP 1 Score: 99.3673 bits (246), Expect = 1.442e-21 Identity = 52/131 (39.69%), Postives = 79/131 (60.31%), Query Frame = 2
Query: 2 SLWRRLESTNSNIGRTVVPLLLHCASLPYGADHLCQCMESDFTNDDWKTRFSAVDKVGLLCQFIEARNI-KEGKAKSAVVHAVCYMTIAMEDINSTVSTRARSVLQSIKISSLKPVYGYMKEHFVKVVEDR 391
SLWR ++S S + VPLLLH SLP+GAD + +F + DWK RF AV+KV ++C+F++ ++ K K ++ HA C A+ED+N V+TRA +L +IK +L+ + + F VV+DR
Sbjct: 1011 SLWRVVKSEFSQLSSLAVPLLLHALSLPHGADIFWTIINGNFNSKDWKMRFEAVEKVAVICRFLDIHSVTKNHLLKYSLAHAFCCFLTAVEDVNPAVATRAGLLLDTIKRPALQGLCLCLDFQFDTVVKDR 1141
The following BLAST results are available for this feature:
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