TCONS_00044389 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044389
Unique NameTCONS_00044389
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length313

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044389 ID=TCONS_00044389|Name=TCONS_00044389|organism=Clytia hemisphaerica|type=transcript|length=313bp
GTTTCTGGAAAGAtttgggttgaaaattttggGCGCCCGAGggcggtggg
cgtttttgtcgagaaaaagtcaaaatgaaagtttgaaaaagtcaaaaaaa
agtcaaaaagtcaaataaaagtaataaaaaaagtcaaaaagtatcggCTA
ctccttttttcaagtgattacCCCTCAACCCATATCATATATGTATGTTT
TTTCTGTCATATATGTATGTATCCTTGAATCTTTTCAGTGTAGGAAGACT
CCAATCTATTCATTTGGTCGAAAACAATCCATCACGTCTCCCAACATTAT
TAGTACATAGTGA
Run BLAST on NCBI

transcript from alignment at sc0005496:186..498

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044389 ID=TCONS_00044389|Name=TCONS_00044389|organism=Clytia hemisphaerica|type=transcript|length=313bp|location=Sequence derived from alignment at sc0005496:186..498 (Clytia hemisphaerica)
TCACTATGTACTAATAATGTTGGGAGACGTGATGGATTGTTTTCGACCAA
ATGAATAGATTGGAGTCTTCCTACACTGAAAAGATTCAAGGATACATACA
TATATGACAGAAAAAACATACATATATGATATGGGTTGAGGGgtaatcac
ttgaaaaaaggagTAGccgatactttttgactttttttattacttttatt
tgactttttgacttttttttgactttttcaaactttcattttgacttttt
ctcgacaaaaacgcccaccgccCTCGGGCGCccaaaattttcaacccaaa
TCTTTCCAGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028021XLOC_028021Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044389-exon-sc0005496-1491911889:186..498TCONS_00044389-exon-sc0005496-1491911889:186..498Clytia hemisphaericaexon
TCONS_00044389-exon-sc0005496-1510915933:186..498TCONS_00044389-exon-sc0005496-1510915933:186..498Clytia hemisphaericaexon
TCONS_00044389-exon-sc0005496-1575043694:186..498TCONS_00044389-exon-sc0005496-1575043694:186..498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005496supercontigsc0005496:186..498 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.207078	0	0.459898	0.726835	0.438448	1.23141	0	0.711932	0	0.257511	1.58766	1.41326	0.387296	0.831256	0.51202	0.262402	1.08757	1.51741	1.31891	1.69636	0	0	0.732298	0.980337	0	0.998113	4.16368	2.47822
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044389 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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