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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044381 ID=TCONS_00044381|Name=TCONS_00044381|organism=Clytia hemisphaerica|type=transcript|length=645bp
CATCTTCCTACATCAAACAAAGGCAAAGTAGAAAATCTGCTATTGTCTTA
ATTAGATCTATCATCTGATATGATATAAATTTTTCATCATTAGAGGGTAA
ACAGATCATTGAGATGGACGACTTCCCATGCAGTCAACCAAACTATGATA
GCACTGTAAGGTTAAAGACATTGAAAAGACAGATCGAGGAAGCTTTGAAG
AAACTCAACCAAACAACTAGCtacaatgaaaaagaaaatgccTTGGAAAC
GATCAAATCGAGTTTATCTGAACTGCTCGTCATGGGTGAAGATGTAACCA
TTGGTGATTTGAGAGTGACCAAGATTGGGAAATTGATGACCAAACTTGAA
TCTTCATCTCACCTCTCGCAAGACCTTGTGACGCAAGCCACAATGATCAA
TAATGGgtggaaagaaaaattacatGTTTATCGTCAACAACTCAAAATAT
CACTCTCAGAGAAAAAAaACAAACCTTCAGAGAAAGTGAACTGCAACGTC
GATCATACAGCACATCCATCAAAATCAGTATTGACTGATAATTCTTACCT
TCCCAAAGGTGATATACTTTTTCTTCTGAagtgtttttcatattttcata
ttacttCATGTCTTACCAAGTTTCCAGTTGCCTggttactttagg Run BLAST on NCBI protein sequence of TCONS_00044381-protein >TCONS_00044381-protein ID=TCONS_00044381-protein|Name=TCONS_00044381-protein|organism=Clytia hemisphaerica|type=polypeptide|length=176bp
MDDFPCSQPNYDSTVRLKTLKRQIEEALKKLNQTTSYNEKENALETIKSS
LSELLVMGEDVTIGDLRVTKIGKLMTKLESSSHLSQDLVTQATMINNGWK
EKLHVYRQQLKISLSEKKNKPSEKVNCNVDHTAHPSKSVLTDNSYLPKGD
ILFLLKCFSYFHITSCLTKFPVAWLL Run BLAST on NCBI transcript from alignment at sc0005487:2845..3852- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044381 ID=TCONS_00044381|Name=TCONS_00044381|organism=Clytia hemisphaerica|type=transcript|length=1008bp|location=Sequence derived from alignment at sc0005487:2845..3852- (Clytia hemisphaerica)
CATCTTCCTACATCAAACAAAGGCAAAGTAGAAAATCTGCTATTGTCTTA
ATTAGATCTATCATCTGATATGATATAAATTTTTCATCATTAGAGGGTAA
ACAGATCATTGAGATGGACGACTTCCCATGCAGTCAACCAAACTATGATA
GCACTGTAAGGTTAAAGACATTGAAAAGACAGATCGAGGAAGCTTTGAAG
AAACTCAACCAAACAACTAGCTACAATGAAAAAGAAAATGCCTTGGAAAC
GATCAAATCGAGTTTATCTGAACTGCTCGTCATGGGTGAAGATGTAACCA
TTGGTGATTTGAGAGTGACCAAGATTGGGAAATTGATGACCAAACTTGAA
TCTTCATCTCACCTCTCGCAAGACCTTGTGACGCAAGCCACAATGATCAA
TAATGGGTGGAAAGAAAAATTACATGTTTATCGTCAACAACTCAAAATAT
CACTCTCAGAGAAAAAAGTTTACTTTACTTTCATTCATTTTTTATATCAA
GTCGAAACTTTTCATAAAATCAGAGAATTTTCCCCCGGACAGAAGCTGGT
CTTCTAGAGAAATTTTCCCTCTCAAAAAAGAATTCCCAAGAAAATTGAGA
TTCCATATTATTTTCTCCATTTTATGAAGAAAAGCTTTTGTGCTCAATTT
ATTTTAGTAGCGCTGTTACAGGTGGCTCATCTCCTAGAGAGTAATTTCCA
CAGTGCAAGTTTTCCAAGAGACAGGCAAGCGACACAAGTCGAAATATCTT
CTAGGGGCACTTAGTTTCTCCAATGTGAATATCGTGAGGAAAATGTTATG
ACTTTTTTTATACTTTTTTGTTAATTGTAGAACAAACCTTCAGAGAAAGT
GAACTGCAACGTCGATCATACAGCACATCCATCAAAATCAGTATTGACTG
ATAATTCTTACCTTCCCAAAGGTGATATACTTTTTCTTCTGAAGTGTTTT
TCATATTTTCATATTACTTCATGTCTTACCAAGTTTCCAGTTGCCTGGTT
ACTTTAGG Coding sequence (CDS) from alignment at sc0005487:2845..3852- >TCONS_00044381 ID=TCONS_00044381|Name=TCONS_00044381|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0005487:2845..3852- (Clytia hemisphaerica)
AACAAACCTTCAGAGAAAGTGAACTGCAACGTCGATCATACAGCACATCC
ATCAAAATCAGTATTGACTGATAATTCTTACCTTCCCAAAGGTGATATAC
TTTTTCTTCTGAAGTGTTTTTCATATTTTCATATTACTTCATGTCTTACC
AAGTTTCCAGTTGCCTGGTTACTTTAGATGGACGACTTCCCATGCAGTCA
ACCAAACTATGATAGCACTGTAAGGTTAAAGACATTGAAAAGACAGATCG
AGGAAGCTTTGAAGAAACTCAACCAAACAACTAGCTACAATGAAAAAGAA
AATGCCTTGGAAACGATCAAATCGAGTTTATCTGAACTGCTCGTCATGGG
TGAAGATGTAACCATTGGTGATTTGAGAGTGACCAAGATTGGGAAATTGA
TGACCAAACTTGAATCTTCATCTCACCTCTCGCAAGACCTTGTGACGCAA
GCCACAATGATCAATAATGGGTGGAAAGAAAAATTACATGTTTATCGTCA
ACAACTCAAAATATCACTCTCAGAGAAAAAAAACAAACCTTCAGAGAAAG
TGAACTGCAACGTCGATCATACAGCACATCCATCAAAATCAGTATTGACT
GATAATTCTTACCTTCCCAAAGGTGATATACTTTTTCTTCTGAAGTGTTT
TTCATATTTTCATATTACTTCATGTCTTACCAAGTTTCCAGTTGCCTGGT
TACTTTAGATGGACGACTTCCCATGCAGTCAACCAAACTATGATAGCACT
GTAAGGTTAAAGACATTGAAAAGACAGATCGAGGAAGCTTTGAAGAAACT
CAACCAAACAACTAGCTACAATGAAAAAGAAAATGCCTTGGAAACGATCA
AATCGAGTTTATCTGAACTGCTCGTCATGGGTGAAGATGTAACCATTGGT
GATTTGAGAGTGACCAAGATTGGGAAATTGATGACCAAACTTGAATCTTC
ATCTCACCTCTCGCAAGACCTTGTGACGCAAGCCACAATGATCAATAATG
GGTGGAAAGAAAAATTACATGTTTATCGTCAACAACTCAAAATATCACTC
TCAGAGAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044381-exon-sc0005487-1575043694:3386..3852 | TCONS_00044381-exon-sc0005487-1575043694:3386..3852 | Clytia hemisphaerica | exon |
| TCONS_00044381-exon-sc0005487-1575043694:2845..3022 | TCONS_00044381-exon-sc0005487-1575043694:2845..3022 | Clytia hemisphaerica | exon |
| TCONS_00044381-exon-sc0005487-1510915933:3386..3852 | TCONS_00044381-exon-sc0005487-1510915933:3386..3852 | Clytia hemisphaerica | exon |
| TCONS_00044381-exon-sc0005487-1510915933:2845..3022 | TCONS_00044381-exon-sc0005487-1510915933:2845..3022 | Clytia hemisphaerica | exon |
| TCONS_00044381-exon-sc0005487-1491911889:3386..3852 | TCONS_00044381-exon-sc0005487-1491911889:3386..3852 | Clytia hemisphaerica | exon |
| TCONS_00044381-exon-sc0005487-1491911889:2845..3022 | TCONS_00044381-exon-sc0005487-1491911889:2845..3022 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005487 | supercontig | sc0005487:2845..3852 - |
Blast
The following BLAST results are available for this feature:
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