TCONS_00044371 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044371
Unique NameTCONS_00044371
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1010

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044371 ID=TCONS_00044371|Name=TCONS_00044371|organism=Clytia hemisphaerica|type=transcript|length=1010bp
cgattcaaaatcaaaacaatcccgttggcactttcgttttcttccaAAAC
ACACCTAAAGACGGTCGAGCTAGGTCTTTTTTCTGAGATTTGAACCATTT
TACCCAAAGATGATGTTTAAAGTACTGTTTTTAATGGGATTTTGTGCTAC
AATCATTCTTACAGAGGATTCAAGATTCTATTCGCTCACTGCAAATGATA
TCGACACGATGAACACGGTTGAAATGGGAGATTACAGAGGAAAGgtttta
ctGATCGTCAACGTTGCAAGTGAGTGTGGATATACAGAAAACCATTACAG
AGAACTTGTTGATCTACAACGCTCCTACCCCAAGACAGATTTTCAAGTTT
TGGCCTTTCCATGTAATCAATTTGGAAAACAAGAACCTAAAAACAATAAA
TATGTTTCCAAGTTCGCTAAAGATAACTATAatgtcaattttcaactttt
tggaaaaatcaaaactatagGGCAATACTCTCATCCAATCTTCAAATGGA
TCAAGAAGGAGACAGATGTTGAACCCAACTGGAATTTTAATAAGTTTTTG
GTCGACAAAACAGGGAAGATTCAACGATATGCAGCTTCACAAGTTTCGCC
TTTACAGATGTCTGCTGATATtcagaatttaattgcaaatcGTCCTCTGC
AAGGTGGATTACATTCTTACGCTACCCACAGCCGCGATGAACTTTgataa
aattctgaaaattgtgataCAGTATCATTTATCACATCAgtttagaaaac
ttttttttacttttaagtcttttttaaaaacttttttatcccGCAAGATA
TTTAACACTTAGCAACGAGgtttttattcctttttattcaaaaacaaaaa
ttttatgtatgtaaaagtaaacttttctaatttttccaggagctccactt
tgtaataaaagaaatatgaaattgttaattgtaaagatttttagagattt
taactatgaaaatataaataaataaaatgtcaATTGATAATTCAGCTAAC
TTTATTTATC
Run BLAST on NCBI

protein sequence of TCONS_00044371-protein

>TCONS_00044371-protein ID=TCONS_00044371-protein|Name=TCONS_00044371-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
MMFKVLFLMGFCATIILTEDSRFYSLTANDIDTMNTVEMGDYRGKVLLIV
NVASECGYTENHYRELVDLQRSYPKTDFQVLAFPCNQFGKQEPKNNKYVS
KFAKDNYNVNFQLFGKIKTIGQYSHPIFKWIKKETDVEPNWNFNKFLVDK
TGKIQRYAASQVSPLQMSADIQNLIANRPLQGGLHSYATHSRDEL
Run BLAST on NCBI

transcript from alignment at sc0005470:1031..3652-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044371 ID=TCONS_00044371|Name=TCONS_00044371|organism=Clytia hemisphaerica|type=transcript|length=2622bp|location=Sequence derived from alignment at sc0005470:1031..3652- (Clytia hemisphaerica)
CGATTCAAAATCAAAACAATCCCGTTGGCACTTTCGTTTTCTTCCAAAAC
ACACCTAAAGACGGTCGAGCTAGGTCTTTTTTCTGAGATTTGAACCATTT
TACCCAAAGATGATGTTTAAAGTACTGTTTTTAATGGGATTTTGTGCTAC
AATCATTCTTACAGAGGATTCAAGATTCTATTCGCTCACTGCAAATGATA
TCGACACGATGAACACGGTTGAAATGGGAGATTACAGAGGAAAGGTAAAC
TTTACTACAGGAATCGTTTTCTGTTCAAATCTTATCTCTTCCCTATAATA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTT
TTTCAGGTTTTACTGATCGTCAACGTTGCAAGTGAGTGTGGATATACAGA
AAACCATTACAGAGAACTTGTTGATCTACAACGCTCCTACCCCAAGACAG
ATTTTCAAGTTTTGGCCTTTCCATGTAATCAATTTGGAAAACAAGAACCT
AAAAACAATAAATATGTTTCCAAGTTCGCTAAAGATAACTATAATGTCAA
TTTTCAACTTTTTGGAAAAATCAAAACTATAGGGCAATACTCTCATCCAA
TCTTCAAATGGATCAAGAAGGAGACAGATGTTGAACCCAACTGGAATTTT
AATAAGTTTTTGGTCGACAAAACAGGGAAGATTCAACGATATGCAGCTTC
ACAAGTTTCGCCTTTACAGATGTCTGCTGATATTCAGAATTTAATTGCAA
ATCGTCCTCTGCAAGGTGGATTACATTCTTACGCTACCCACAGCCGCGAT
GAACTTTGATAAAATTCTGAAAATTGTGATACAGTATCATTTATCACATC
AGTTTAGAAAACTTTTTTTTACTTTTAAGTCTTTTTTAAAAACTTTTTTA
TCCCGCAAGATATTTAACACTTAGCAACGAGGTTTTTATTCCTTTTTATT
CAAAAACAAAAATTTTATGTATGTAAAAGTAAACTTTTCTAATTTTTCCA
GGAGCTCCACTTTGTAATAAAAGAAATATGAAATTGTTAATTGTAAAGAT
TTTTAGAGATTTTAACTATGAAAATATAAATAAATAAAATGTCAATTGAT
AATTCAGCTAACTTTATTTATC

Coding sequence (CDS) from alignment at sc0005470:1031..3652-

>TCONS_00044371 ID=TCONS_00044371|Name=TCONS_00044371|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at sc0005470:1031..3652- (Clytia hemisphaerica)
GTTTTACTGATCGTCAACGTTGCAAGTGAGTGTGGATATACAGAAAACCA
TTACAGAGAACTTGTTGATCTACAACGCTCCTACCCCAAGACAGATTTTC
AAGTTTTGGCCTTTCCATGTAATCAATTTGGAAAACAAGAACCTAAAAAC
AATAAATATGTTTCCAAGTTCGCTAAAGATAACTATAATGTCAATTTTCA
ACTTTTTGGAAAAATCAAAACTATAGGGCAATACTCTCATCCAATCTTCA
AATGGATCAAGAAGGAGACAGATGTTGAACCCAACTGGAATTTTAATAAG
TTTTTGGTCGACAAAACAGGGAAGATTCAACGATATGCAGCTTCACAAGT
TTCGCCTTTACAGATGTCTGCTGATATTCAGAATTTAATTGCAAATCGTC
CTCTGCAAGGTGGATTACATTCTTACGCTACCCACAGCCGCGATGAACTT
TGAATGATGTTTAAAGTACTGTTTTTAATGGGATTTTGTGCTACAATCAT
TCTTACAGAGGATTCAAGATTCTATTCGCTCACTGCAAATGATATCGACA
CGATGAACACGGTTGAAATGGGAGATTACAGAGGAAAGGTTTTACTGATC
GTCAACGTTGCAAGTGAGTGTGGATATACAGAAAACCATTACAGAGAACT
TGTTGATCTACAACGCTCCTACCCCAAGACAGATTTTCAAGTTTTGGCCT
TTCCATGTAATCAATTTGGAAAACAAGAACCTAAAAACAATAAATATGTT
TCCAAGTTCGCTAAAGATAACTATAATGTCAATTTTCAACTTTTTGGAAA
AATCAAAACTATAGGGCAATACTCTCATCCAATCTTCAAATGGATCAAGA
AGGAGACAGATGTTGAACCCAACTGGAATTTTAATAAGTTTTTGGTCGAC
AAAACAGGGAAGATTCAACGATATGCAGCTTCACAAGTTTCGCCTTTACA
GATGTCTGCTGATATTCAGAATTTAATTGCAAATCGTCCTCTGCAAGGTG
GATTACATTCTTACGCTACCCACAGCCGCGATGAACTTTGAATGATGTTT
AAAGTACTGTTTTTAATGGGATTTTGTGCTACAATCATTCTTACAGAGGA
TTCAAGATTCTATTCGCTCACTGCAAATGATATCGACACGATGAACACGG
TTGAAATGGGAGATTACAGAGGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028003XLOC_028003Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044371-proteinTCONS_00044371-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044371-exon-sc0005470-1575043694:3409..3652TCONS_00044371-exon-sc0005470-1575043694:3409..3652Clytia hemisphaericaexon
TCONS_00044371-exon-sc0005470-1575043694:1031..1796TCONS_00044371-exon-sc0005470-1575043694:1031..1796Clytia hemisphaericaexon
TCONS_00044371-exon-sc0005470-1510915933:3409..3652TCONS_00044371-exon-sc0005470-1510915933:3409..3652Clytia hemisphaericaexon
TCONS_00044371-exon-sc0005470-1510915933:1031..1796TCONS_00044371-exon-sc0005470-1510915933:1031..1796Clytia hemisphaericaexon
TCONS_00044371-exon-sc0005470-1491911889:3409..3652TCONS_00044371-exon-sc0005470-1491911889:3409..3652Clytia hemisphaericaexon
TCONS_00044371-exon-sc0005470-1491911889:1031..1796TCONS_00044371-exon-sc0005470-1491911889:1031..1796Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005470supercontigsc0005470:1031..3652 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.56206	4.01681	18.0037	17.025	72.8109	56.4977	41.5692	41.3689	33.8901	22.6073	31.0525	21.2681	27.9253	28.5419	43.9377	37.8132	39.3344	36.0906	6.82706	11.4797	28.8633	32.2719	29.9118	31.3495	30.9102	38.791	15.912	8.75013	50.3895	31.7049
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000889Glutathione_peroxidase
IPR029759GPX_AS
IPR029760GPX_CS
IPR012336Thioredoxin-like_fold
Vocabulary: Biological Process
TermDefinition
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0004602glutathione peroxidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006979 response to oxidative stress
molecular_function GO:0004602 glutathione peroxidase activity
Blast
[Close]
BLAST of TCONS_00044371 vs. Swiss-Prot (Human)
Match: GPX7 (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.505e-38
Identity = 71/162 (43.83%), Postives = 98/162 (60.49%), Query Frame = 2 
Query:  164 EDSRFYSLTANDIDTMNTVEMGDYRGKVLLIVNVASECGYTENHYRELVDLQRSYPKTDFQVLAFPCNQFGKQEPKNNKYVSKFAKDNYNVNFQLFGKIKTIGQYSHPIFKWIKKETDVEPNWNFNKFLVDKTGKI-----QRYAASQVSPLQMSADIQNLI 634
            ++  FY   A +I     V +  YRG V L+VNVASECG+T+ HYR L  LQR      F VLAFPCNQFG+QEP +NK +  FA+  Y+V+F +F KI   G  +HP FK++ + +  EP WNF K+LV   GK+        +  +V P Q++A ++ LI
Sbjct:   21 QEQDFYDFKAVNIRG-KLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTSGKEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRP-QITALVRKLI 180
The following BLAST results are available for this feature:
BLAST of TCONS_00044371 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GPX71.505e-3843.83Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
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