TCONS_00044369 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044369
Unique NameTCONS_00044369
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length566

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044369 ID=TCONS_00044369|Name=TCONS_00044369|organism=Clytia hemisphaerica|type=transcript|length=566bp
NNGCTCCAGAGCAAACAACGGAATCAGGCGGCGAATCGACCGAAGGCATT
GGAGGAGAGACGACGGAATTCACAGAAGCATTCGGCTCAGGGTCCGGAAT
AGATCTTGGTTTCAATAAACAATAACGAATTGTTCATCATTAGTCAAAAT
TGAAAGCTCACTTTCAGAAGAGAgactcttttttatttattaccTAAAAG
ATTATGCACTGTTATTTTTAAAGTAATAATTCGTGTCGACTTTTAAGACA
TTATTTTTTAAGTCTATTGGCTTTGAGTATGCACTCCTTTTGGTACCATG
TGTAAACTAGGTCACTGTAATTAGATTAATTCCTCTGAGATCGGTTTCCA
CATGATTGAAGGTAGAGTGCACTTTTAAAGCGAATTGACTTTAGTTTATT
GATATTAGAAATGttcattaaaaattgaattttgaaacttaaaaaaaaaa
caccttgAGACATTTCCACTACCATATTCCACTGTATTTAAGATATATCG
AAGGTTGGTTGATTTGTAGGTCTTTGAGTCAAACACGTGATATAATCGTA
TGTAACCTTTGGTAAT
Run BLAST on NCBI

transcript from alignment at sc0005467:324..889

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044369 ID=TCONS_00044369|Name=TCONS_00044369|organism=Clytia hemisphaerica|type=transcript|length=566bp|location=Sequence derived from alignment at sc0005467:324..889 (Clytia hemisphaerica)
ATTACCAAAGGTTACATACGATTATATCACGTGTTTGACTCAAAGACCTA
CAAATCAACCAACCTTCGATATATCTTAAATACAGTGGAATATGGTAGTG
GAAATGTCTcaaggtgttttttttttaagtttcaaaattcaatttttaat
gaaCATTTCTAATATCAATAAACTAAAGTCAATTCGCTTTAAAAGTGCAC
TCTACCTTCAATCATGTGGAAACCGATCTCAGAGGAATTAATCTAATTAC
AGTGACCTAGTTTACACATGGTACCAAAAGGAGTGCATACTCAAAGCCAA
TAGACTTAAAAAATAATGTCTTAAAAGTCGACACGAATTATTACTTTAAA
AATAACAGTGCATAATCTTTTAggtaataaataaaaaagagtcTCTCTTC
TGAAAGTGAGCTTTCAATTTTGACTAATGATGAACAATTCGTTATTGTTT
ATTGAAACCAAGATCTATTCCGGACCCTGAGCCGAATGCTTCTGTGAATT
CCGTCGTCTCTCCTCCAATGCCTTCGGTCGATTCGCCGCCTGATTCCGTT
GTTTGCTCTGGAGCNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028001XLOC_028001Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044369-exon-sc0005467-1491911889:324..889TCONS_00044369-exon-sc0005467-1491911889:324..889Clytia hemisphaericaexon
TCONS_00044369-exon-sc0005467-1510915933:324..889TCONS_00044369-exon-sc0005467-1510915933:324..889Clytia hemisphaericaexon
TCONS_00044369-exon-sc0005467-1575043694:324..889TCONS_00044369-exon-sc0005467-1575043694:324..889Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005467supercontigsc0005467:324..889 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0969086	0.22504	0.110083	0	0	0.127765	0.239225	0	0.10373	0	0	0	0	0	0	6.34119	8.64054	0.10564	0.110545	32.1881	31.2129	56.5163	59.5653	19.5256	29.1387	0	0	0.110301	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044369 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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