TCONS_00044368 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044368
Unique NameTCONS_00044368
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length708

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044368 ID=TCONS_00044368|Name=TCONS_00044368|organism=Clytia hemisphaerica|type=transcript|length=708bp
TAACACCAACGGTCGCCAATACATGTTCAAGTGTTTCTTCTCTTCTTCCA
TTACCAGCGGGTCGATTCGAGTTAAAAATCTTCCTAAACCGAAATTTTGG
GACAGACAATCCAATCATCCTCATCGGGTTTTCATCAGAAGTCAGCATTG
ACGTCGAAAACTCTGCCACTATCGACAGTGTACAACGGTCTTTAACCAAA
AACACTTACGCGATGGTTCTCTCTTCTTCAGCTATTCAAGATCTAAAAGA
CGGAGAAAATGAACTCCTCATCAACGTTGCCNATGGTTCTCTCTTCTTCA
GCTATTCAAGATCTAAAAGACGGAGAAAATGAACTCCTCATCAACGTTGC
TGTCCAACTACATGACGTCAACATGACATCACTTCAAGTGACCTTCTTGA
GGTTTGGTGTTTTCTTATGCAAAGAGTATGTTCCAACAACTCAACCACCA
ACAGTGACCATTGGTGGAAATTGCATGAATTATGTTTACCCTGACCACTA
TGAAGCCGACTTTGAATCTGGCTCCATTGAACTTCCAATCGCCAAAACGT
CCAACGTTTCATGGCAGTTAACGATTGGTGTTAAAGGAGCTTTCACAGAC
CTTAGGTTGAGTAGTACCATCAAGTTACCACTCAATATTCCTGAAGAAAA
ATGTATCTCCATATACCAAAGTACAGATGCCAACCAAGCCTTGGTTGCCA
GATCCANN
Run BLAST on NCBI

protein sequence of TCONS_00044368-protein

>TCONS_00044368-protein ID=TCONS_00044368-protein|Name=TCONS_00044368-protein|organism=Clytia hemisphaerica|type=polypeptide|length=150bp
MNSSSTLXMVLSSSAIQDLKDGENELLINVAVQLHDVNMTSLQVTFLRFG
VFLCKEYVPTTQPPTVTIGGNCMNYVYPDHYEADFESGSIELPIAKTSNV
SWQLTIGVKGAFTDLRLSSTIKLPLNIPEEKCISIYQSTDANQALVARSX
Run BLAST on NCBI

transcript from alignment at sc0005467:3538..4407-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044368 ID=TCONS_00044368|Name=TCONS_00044368|organism=Clytia hemisphaerica|type=transcript|length=870bp|location=Sequence derived from alignment at sc0005467:3538..4407- (Clytia hemisphaerica)
TAACACCAACGGTCGCCAATACATGTTCAAGTGTTTCTTCTCTTCTTCCA
TTACCAGCGGGTCGATTCGAGTTAAAAATCTTCCTAAACCGAAATTTTGG
GACAGACAATCCAATCATCCTCATCGGGTTTTCATCAGAAGTCAGCATTG
ACGTCGAAAACTCTGCCACTATCGACAGTGTACAACGGTCTTTAACCAAA
AACACTTACGCGATGGTTCTCTCTTCTTCAGCTATTCAAGATCTAAAAGA
CGGAGAAAATGAACTCCTCATCAACGTTGCCNATGGTTCTCTCTTCTTCA
GCTATTCAAGATCTAAAAGACGGAGAAAATGAACTCCTCATCAACGTTGC
TGTCCAACTACATGACGTCAACATGACATCACTTCAAGTGACCTTCTTGA
GGTTTGGTGTTTTCTTATGCAAAGAGTATGTTCCAACAACTCAACCACCA
ACAGTGACCATTGGTGGAAATTGCATGAATTATGTTTACCCTGACCACTA
TGAAGCCGACTTTGAATCTGGCTCCATTGAACTTCCAATCGCCAAAACGT
CCAACGTTTCATGGCAGTTAACGGTAAATTTGCTTTTATAGATTTTGTTT
GAATTTTTCAAGGCATTTCATTATTATTGGGCCGCTGAACAGCACAAAAA
ATGGAGTTCTACATATTACTACTACTTACTACACATACTACTTTTTCTTT
ATCCATTACATGTTTCTTCTGATTTTACTTTCTAGATTGGTGTTAAAGGA
GCTTTCACAGACCTTAGGTTGAGTAGTACCATCAAGTTACCACTCAATAT
TCCTGAAGAAAAATGTATCTCCATATACCAAAGTACAGATGCCAACCAAG
CCTTGGTTGCCAGATCCANN

Coding sequence (CDS) from alignment at sc0005467:3538..4407-

>TCONS_00044368 ID=TCONS_00044368|Name=TCONS_00044368|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at sc0005467:3538..4407- (Clytia hemisphaerica)
ATTGGTGTTAAAGGAGCTTTCACAGACCTTAGGTTGAGTAGTACCATCAA
GTTACCACTCAATATTCCTGAAGAAAAATGTATCTCCATATACCAAAGTA
CAGATGCCAACCAAGCCTTGGTTGCCAGATCCANNATGAACTCCTCATCA
ACGTTGCCNATGGTTCTCTCTTCTTCAGCTATTCAAGATCTAAAAGACGG
AGAAAATGAACTCCTCATCAACGTTGCTGTCCAACTACATGACGTCAACA
TGACATCACTTCAAGTGACCTTCTTGAGGTTTGGTGTTTTCTTATGCAAA
GAGTATGTTCCAACAACTCAACCACCAACAGTGACCATTGGTGGAAATTG
CATGAATTATGTTTACCCTGACCACTATGAAGCCGACTTTGAATCTGGCT
CCATTGAACTTCCAATCGCCAAAACGTCCAACGTTTCATGGCAGTTAACG
ATTGGTGTTAAAGGAGCTTTCACAGACCTTAGGTTGAGTAGTACCATCAA
GTTACCACTCAATATTCCTGAAGAAAAATGTATCTCCATATACCAAAGTA
CAGATGCCAACCAAGCCTTGGTTGCCAGATCCANNATGAACTCCTCATCA
ACGTTGCCNATGGTTCTCTCTTCTTCAGCTATTCAAGATCTAAAAGACGG
AGAAAATGAACTCCTCATCAACGTTGCTGTCCAACTACATGACGTCAACA
TGACATCACTTCAAGTGACCTTCTTGAGGTTTGGTGTTTTCTTATGCAAA
GAGTATGTTCCAACAACTCAACCACCAACAGTGACCATTGGTGGAAATTG
CATGAATTATGTTTACCCTGACCACTATGAAGCCGACTTTGAATCTGGCT
CCATTGAACTTCCAATCGCCAAAACGTCCAACGTTTCATGGCAGTTAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028000XLOC_028000Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044368-proteinTCONS_00044368-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044368-exon-sc0005467-1575043694:3835..4407TCONS_00044368-exon-sc0005467-1575043694:3835..4407Clytia hemisphaericaexon
TCONS_00044368-exon-sc0005467-1575043694:3538..3672TCONS_00044368-exon-sc0005467-1575043694:3538..3672Clytia hemisphaericaexon
TCONS_00044368-exon-sc0005467-1510915933:3835..4407TCONS_00044368-exon-sc0005467-1510915933:3835..4407Clytia hemisphaericaexon
TCONS_00044368-exon-sc0005467-1510915933:3538..3672TCONS_00044368-exon-sc0005467-1510915933:3538..3672Clytia hemisphaericaexon
TCONS_00044368-exon-sc0005467-1491911889:3835..4407TCONS_00044368-exon-sc0005467-1491911889:3835..4407Clytia hemisphaericaexon
TCONS_00044368-exon-sc0005467-1491911889:3538..3672TCONS_00044368-exon-sc0005467-1491911889:3538..3672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005467supercontigsc0005467:3538..4407 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.171149	0.119825	0.148423	0	0.0947013	0.0472848	0.147317	0	0.1733	11.2083	14.1775	0.226735	0.0790874	29.3842	30.8235	41.1401	53.7878	79.6931	93.8785	0.097489	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044368 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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