TCONS_00044355 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044355
Unique NameTCONS_00044355
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length599

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044355 ID=TCONS_00044355|Name=TCONS_00044355|organism=Clytia hemisphaerica|type=transcript|length=599bp
TGGACTTTGTTTCTCGTATTCGACCTGCTGAGGATGAAAAAGTTTTGTCT
TATGACAACAATTGTAAACTTGCCTTGATTTTACAGGACTCTAAACCCAA
GCTTTCTAGTGTTACAATTGAACAATTTAATATTGctaatttgagaattt
tttacGAGCTACTTTTTTCTGGGAAGCTTTCCACCCTTTTCCATATACAG
GAGTACCTTTCTTATGCGATTAAGGTCTTAGAGCTGGCAACTAAGTACAC
ATGGCAATCCGTGTTGCAATATGACGATGAATTTCGGATTTTGCAANNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNTCCGTGTTGCAATATGACGATGAATTTCGGATTTTGCAACATAC
TTATGGGTTCTCGTGGAGTACTGACCATAGCCATCTACATGAGGTTGTTC
TTATACCTTGCTGGGCTGCAAAGCTACCTCGTGGGCTTGGGCATGGCACT
GATACTTCCTCACCCAAGATGGATTTTCTCTCCTCTGGTCTTGCGGGTAA
CAGTAAGGTTTCTGGTCCTCCCACAATGACACATCTCTCGTCCGGCTCT
Run BLAST on NCBI

protein sequence of TCONS_00044355-protein

>TCONS_00044355-protein ID=TCONS_00044355-protein|Name=TCONS_00044355-protein|organism=Clytia hemisphaerica|type=polypeptide|length=199bp
DFVSRIRPAEDEKVLSYDNNCKLALILQDSKPKLSSVTIEQFNIANLRIF
YELLFSGKLSTLFHIQEYLSYAIKVLELATKYTWQSVLQYDDEFRILQXX
XXXXXXXXXXXXXXXXXXSVLQYDDEFRILQHTYGFSWSTDHSHLHEVVL
IPCWAAKLPRGLGHGTDTSSPKMDFLSSGLAGNSKVSGPPTMTHLSSGS
Run BLAST on NCBI

transcript from alignment at sc0005438:14..612

Legend: exonCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044355 ID=TCONS_00044355|Name=TCONS_00044355|organism=Clytia hemisphaerica|type=transcript|length=599bp|location=Sequence derived from alignment at sc0005438:14..612 (Clytia hemisphaerica)
AGAGCCGGACGAGAGATGTGTCATTGTGGGAGGACCAGAAACCTTACTGT
TACCCGCAAGACCAGAGGAGAGAAAATCCATCTTGGGTGAGGAAGTATCA
GTGCCATGCCCAAGCCCACGAGGTAGCTTTGCAGCCCAGCAAGGTATAAG
AACAACCTCATGTAGATGGCTATGGTCAGTACTCCACGAGAACCCATAAG
TATGTTGCAAAATCCGAAATTCATCGTCATATTGCAACACGGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTGCAAAATCCGAAATTCATCGTCATATTGCAACACGGATTGCCATG
TGTACTTAGTTGCCAGCTCTAAGACCTTAATCGCATAAGAAAGGTACTCC
TGTATATGGAAAAGGGTGGAAAGCTTCCCAGAAAAAAGTAGCTCgtaaaa
aattctcaaattagCAATATTAAATTGTTCAATTGTAACACTAGAAAGCT
TGGGTTTAGAGTCCTGTAAAATCAAGGCAAGTTTACAATTGTTGTCATAA
GACAAAACTTTTTCATCCTCAGCAGGTCGAATACGAGAAACAAAGTCCA

Coding sequence (CDS) from alignment at sc0005438:14..612

>TCONS_00044355 ID=TCONS_00044355|Name=TCONS_00044355|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0005438:14..612 (Clytia hemisphaerica)
AGAGCCGGACGAGAGATGTGTCATTGTGGGAGGACCAGAAACCTTACTGT
TACCCGCAAGACCAGAGGAGAGAAAATCCATCTTGGGTGAGGAAGTATCA
GTGCCATGCCCAAGCCCACGAGGTAGCTTTGCAGCCCAGCAAGGTATAAG
AACAACCTCATGTAGATGGCTATGGTCAGTACTCCACGAGAACCCATAAG
TATGTTGCAAAATCCGAAATTCATCGTCATATTGCAACACGGANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNTTGCAAAATCCGAAATTCATCGTCATATTGCAACACGGATTGCCATG
TGTACTTAGTTGCCAGCTCTAAGACCTTAATCGCATAAGAAAGGTACTCC
TGTATATGGAAAAGGGTGGAAAGCTTCCCAGAAAAAAGTAGCTCgtaaaa
aattctcaaattagCAATATTAAATTGTTCAATTGTAACACTAGAAAGCT
TGGGTTTAGAGTCCTGTAAAATCAAGGCAAGTTTACAATTGTTGTCATAA
GACAAAACTTTTTCATCCTCAGCAGGTCGAATACGAGAAACAAAGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027988XLOC_027988Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044355-exon-sc0005438-1491911889:14..612TCONS_00044355-exon-sc0005438-1491911889:14..612Clytia hemisphaericaexon
TCONS_00044355-exon-sc0005438-1510915933:14..612TCONS_00044355-exon-sc0005438-1510915933:14..612Clytia hemisphaericaexon
TCONS_00044355-exon-sc0005438-1575043694:14..612TCONS_00044355-exon-sc0005438-1575043694:14..612Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044355-proteinTCONS_00044355-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005438supercontigsc0005438:14..612 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.25393	0.367573	0.875885	0.18402	0.167504	0.0969404	0.636942	0.593911	0.496324	0.509433	0.537104	1.03095	1.21051	0.757179	0.223436	0.285822	0.532871	0.483723	0	0.109757	0.758207	0	0.115958	0	0.211689	0.892825	0	0.331503	0.127091	0.111429
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044355 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top