TCONS_00044352 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044352
Unique NameTCONS_00044352
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044352 ID=TCONS_00044352|Name=TCONS_00044352|organism=Clytia hemisphaerica|type=transcript|length=237bp
CGCCGAAATAAGACAGCCCTTATGTATGCATGTATGAACGGACACAGTCA
AATCGTGGCTTACCTCTTACGTATCGGCGTTAACCCGGATGCGCGAGATA
GCTCTGACAACACGCCGATACATTATGCGGCCGCTTACGGATGGTATCAT
TGTGTCAAGTTATTGTTAGAGGGTGGTGCCGATGCAAACATACCTAATAA
TTGGAAGACAACACCTTTAGCAGTTGCGTTAATGAAG
Run BLAST on NCBI

transcript from alignment at sc0005434:3951..4452+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044352 ID=TCONS_00044352|Name=TCONS_00044352|organism=Clytia hemisphaerica|type=transcript|length=502bp|location=Sequence derived from alignment at sc0005434:3951..4452+ (Clytia hemisphaerica)
CGCCGAAATAAGACAGCCCTTATGTATGCATGTATGAACGGACACAGTCA
AATCGTGGCTTACCTCTTACGTATCGGCGTTAACCCGGATGCGCGAGATA
GCTCTGACAACACGCCGATACATTATGCGGCCGCTTACGGATGGTATCAT
TGTGTCAAGTTATTGTTAGAGGGTGGTGCCGATGCAAACATACCTAATAA
TTGGAAGGTAATgcataacttttaatttaaaactcaaaataaaatctaGT
CTTGAGTTGTTTATAGTATAGTAAGCAGATATtgaataggtaaaagttgg
ttattgagatttattaacccgactATTTGATGTAATATTCATCAAGATAC
ATGatgaattttatgaaaatgtctctattattctttccaaaaacgaAACC
TGCGATGCTTTTTAATATCTccaaaaaaacaataatatattattttttac
accttttacTTTTTCATTCTAGACAACACCTTTAGCAGTTGCGTTAATGA
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027985XLOC_027985Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044352-exon-sc0005434-1491911889:3951..4157TCONS_00044352-exon-sc0005434-1491911889:3951..4157Clytia hemisphaericaexon
TCONS_00044352-exon-sc0005434-1510915933:3951..4157TCONS_00044352-exon-sc0005434-1510915933:3951..4157Clytia hemisphaericaexon
TCONS_00044352-exon-sc0005434-1575043694:3951..4157TCONS_00044352-exon-sc0005434-1575043694:3951..4157Clytia hemisphaericaexon
TCONS_00044352-exon-sc0005434-1491911889:4423..4452TCONS_00044352-exon-sc0005434-1491911889:4423..4452Clytia hemisphaericaexon
TCONS_00044352-exon-sc0005434-1510915933:4423..4452TCONS_00044352-exon-sc0005434-1510915933:4423..4452Clytia hemisphaericaexon
TCONS_00044352-exon-sc0005434-1575043694:4423..4452TCONS_00044352-exon-sc0005434-1575043694:4423..4452Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005434supercontigsc0005434:3951..4452 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	9.28159	9.41005	11.5975	3.23173	4.99558	3.93895	1.99289	5.17693	1.41723	2.17893	1.00344	6.94211	0	1.33549	0	0.000229127	0	0	2.45305	1.31125	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044352 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top