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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044351 ID=TCONS_00044351|Name=TCONS_00044351|organism=Clytia hemisphaerica|type=transcript|length=657bp
gaaaatttgaatggaaGTTTCAAATCTCTCGTTGAGGTGGTTCAGAAGAG
TTCTGGCTCAAACTTTCCTGCCGCTGTGCAAATCTTTGGTGCAGCATTTA
TGGCACTCAACTTCTCATCAATAATGAAAACTTTCGGCTTCGTACCGATG
CCTATTGTCATCGGGCCCACTGGTACGACGAAATCAACGATTACAAAACT
AGTGATGCGGTCTGTTGGTGTCACCAGTAACATCTATGATCCTACATACG
CTTCAATGGCAGAGTTGGTTGCATCAGCCCCGATCCCTCTGCTGTGGGAA
GACGCTgagaatttttctgttttgggAGAGATGGCTATGCTTGTATACAA
TAACtcaCAACGCTCAAAATGCGATAAAGGTGCCGTACAGGCAGGTCCAC
CCTTGACAATGCCGGTATCGACAAcaaatggttgttttttaaagaaagtt
acCGATCCGGTTTTTCATGAAAGGTTCATCTCGAGAGTGTTCTCGttcct
tttataagaacaaacacgGAGCGTCTATCGGTAATCACAAAGCTAAAATT
TGCTCTAGACGTTACCAAAAAGTCATCAGACGTGGCCAGTTGTTTTACCC
AATACATTGGCTTGGAAGACTGCATCGGCCCTGGTATCATTACAGATCCT
CTGATGA Run BLAST on NCBI protein sequence of TCONS_00044351-protein >TCONS_00044351-protein ID=TCONS_00044351-protein|Name=TCONS_00044351-protein|organism=Clytia hemisphaerica|type=polypeptide|length=168bp
ENLNGSFKSLVEVVQKSSGSNFPAAVQIFGAAFMALNFSSIMKTFGFVPM
PIVIGPTGTTKSTITKLVMRSVGVTSNIYDPTYASMAELVASAPIPLLWE
DAENFSVLGEMAMLVYNNSQRSKCDKGAVQAGPPLTMPVSTTNGCFLKKV
TDPVFHERFISRVFSFLL Run BLAST on NCBI transcript from alignment at sc0005432:610..4469+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044351 ID=TCONS_00044351|Name=TCONS_00044351|organism=Clytia hemisphaerica|type=transcript|length=3860bp|location=Sequence derived from alignment at sc0005432:610..4469+ (Clytia hemisphaerica)
gaaaatttgaatggaaGTTTCAAATCTCTCGTTGAGGTGGTTCAGAAGAG
TTCTGGCTCAAACTTTCCTGCCGCTGTGCAAATCTTTGGTGCAGCATTTA
TGGCACTCAACTTCTCATCAATAATGAAAACTTTCGGCTTCGTACCGATG
CCTATTGTCATCGGGCCCACTGGTACGACGAAATCAACGATTACAAAACT
AGTGATGCGGTCTGTTGGTGTCACCAGTAACATCTATGGTAAGGTTCCtc
agatttttcattaaaaatccaATCTCCAAAATTAATAAAGCGAAAGAATT
GGCAATAAAAATGGAAACTAcatttctttttgcttgaaGATGAGTgctat
agaaaaaataataatatgatGAAAGATGATGCAAAGCTACAAATTCACTA
AAACTAGCTCCTTTACTCTTTAGATCCTACATACGCTTCAATGGCAGAGT
TGGTTGCATCAGCCCCGATCCCTCTGCTGTGGGAAGACGCTgagaatttt
tctgttttgggAGAGATGGCTATGCTTGTATACAATAACGTaagtttcca
aaattttccattcTAGCAGTGGCAGTTTTGATCAAAAGTTCATGGTGTTA
CTTGAACTTCTTCGAGCTTACTTACAATTTATTGAAAACTTACAAAGGTT
TGAGTATTTAATAAAATACAAGAGAAAAAAGAGGCCATTTCGTTTTAATT
CAGGCCTCACATATCAGTATAACTTTCCTCCCAACGGTATCAGAAAGAAA
CTCAAAATAATACGAGAAATAATATTCTTGGGTCAAGATTTTTACAACAG
CAACAGAAAGTTTATGCATGTCTTTGATTAAAATTTCACGAATATCTAAC
ATTAGGGGTCAGTTTTGCTATATGCTTAACCGGTCATGAAATAGGATTCT
CGaagtaaaattattttctttttcagtcaCAACGCTCAAAATGCGATAAA
GGTGCCGTACAGGCAGGTCCACCCTTGACAATGCCGGTATCGACAAcaaa
tggttgttttttaaagaaagttacCGATCCGGTTTTTCATGAAAGGTGAG
TAGAGAAACAGACAACGGGTGATAATACATAAAATTTAATTAAATCTAGC
GCCAATTTAATCGCAAAATTTGAACAAGGGGTCCCAGGAAAAAATTAGCT
CCCCCCCGTGAGTTTTCAGTCCCCCTGAAAGATTTATGAAGtttttgtta
gcccccaggacttttgaccctagaaAAAGATTGACccagtaaaaaagggt
tttctaATGTGAATTGCGTTCACttctaagtttaagataaaatattttgc
acactttctatAAAGATATCGTGGCGCAGGCGaagatttttcagattcat
gagcttcaatttcAGCCAACCATTAAGCTGAATTATGTTAGCCCCTacgt
taagtgatgagattttagctcccccaagtacataggtccccccaacCAGT
AGGGGAGGGGCTGACGCTATGTCGAACCATAAAAAAGCCTGTTCAAAGAC
TCACTCACACACTGTAATGTGAATTAGAACAGAAAAAGAATTTacgactt
gaaaaatatttcaggctagcGTATATGCTATGATTATGAAATGCTTagaa
attctgcaaatctgagcctccGTATAATAAGTGTTAAATTTAAAACATGT
ACAGTAAAACACTTTCTCAATTGTGTGCGTGTGTGTGGGTTTCTAAATTT
TTGGGCAGCCTAGAGACTGAAAATCTAGGGatctttttctcatttttaaa
aatttagattttgagagCCTAGATAGACACTGGTTTTAATTGTTTTACAA
TCGGGCCTATCAATGATTTGAATCTATTGAAGTTGAGACTAGTGCGTATG
CACTATGTGGGGTACCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgaaaatt
tttcgcgagcataaactttcgcgaattgccctgtttagaattttcaaaga
catttactttcgcgaaaaaggccaaaatttgcgaaaatcgcttctgcttg
cgaaagtttgtacgtctaAAGTAGTACACATGTTTGGTCCAGTACCCCCA
GCTATGCAGTAAAAAAGGAAAACATAATAGACTACTTAATAGAAGCTGGA
TAGATAGATTTTTGACGGATTTGGGCAATTTCACAAAATAGATATTTTAT
TAAATAATTCACATTACCTTTGTAGGTgtaccaaatttgataaatgacct
aTCAAAATTGTAATTCATCCTTTCTCGTCCCAATGAAAAAAGGTCTTATT
CTTTAAAATCATATACCTTCAGAAATTTCACTTCAAAGAGGGTATtttaa
ttctgacacccttggTAAATAACCACCCACCACCCTTTTTTTNTCCTTTC
TCGTCCCAATGAAAAAAGGTCTTATTCTTTAAAATCATATACCTTCAGAA
ATTTCACTTCAAAGAGGCTATtttaattctgacacccttggTAAATAACC
ACCCACCACCCTTTTTTGAGAATTGAAGAGCAATGATTAATAAGTTATTA
AAACGCACAAACACTTTGTTTTGTAGGTTCATCTCGAGAGTGTTCTCGtt
ccttttataagaacaaacacgGAGCGTCTATCGGTAATCACAAAGCTAAA
ATTTGCTCTAGACGTTACCAAAAAGTCATCAGACGTGGCCAGTTGTTTTA
CCCAATACATTGGCTTGGAAGACTGCATCGGCCCTGGTATCATTACAGAT
CCTCTGATGA Coding sequence (CDS) from alignment at sc0005432:610..4469+ >TCONS_00044351 ID=TCONS_00044351|Name=TCONS_00044351|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0005432:610..4469+ (Clytia hemisphaerica)
gaaaatttgaatggaaGTTTCAAATCTCTCGTTGAGGTGGTTCAGAAGAG
TTCTGGCTCAAACTTTCCTGCCGCTGTGCAAATCTTTGGTGCAGCATTTA
TGGCACTCAACTTCTCATCAATAATGAAAACTTTCGGCTTCGTACCGATG
CCTATTGTCATCGGGCCCACTGGTACGACGAAATCAACGATTACAAAACT
AGTGATGCGGTCTGTTGGTGTCACCAGTAACATCTATGATCCTACATACG
CTTCAATGGCAGAGTTGGTTGCATCAGCCCCGATCCCTCTGCTGTGGGAA
GACGCTgagaatttttctgttttgggAGAGATGGCTATGCTTGTATACAA
TAACtcaCAACGCTCAAAATGCGATAAAGGTGCCGTACAGGCAGGTCCAC
CCTTGACAATGCCGGTATCGACAAcaaatggttgttttttaaagaaagtt
acCGATCCGGTTTTTCATGAAAGGTTCATCTCGAGAGTGTTCTCGttcct
tttataagaaaatttgaatggaaGTTTCAAATCTCTCGTTGAGGTGGTTC
AGAAGAGTTCTGGCTCAAACTTTCCTGCCGCTGTGCAAATCTTTGGTGCA
GCATTTATGGCACTCAACTTCTCATCAATAATGAAAACTTTCGGCTTCGT
ACCGATGCCTATTGTCATCGGGCCCACTGGTACGACGAAATCAACGATTA
CAAAACTAGTGATGCGGTCTGTTGGTGTCACCAGTAACATCTATGATCCT
ACATACGCTTCAATGGCAGAGTTGGTTGCATCAGCCCCGATCCCTCTGCT
GTGGGAAGACGCTgagaatttttctgttttgggAGAGATGGCTATGCTTG
TATACAATAACtcaCAACGCTCAAAATGCGATAAAGGTGCCGTACAGGCA
GGTCCACCCTTGACAATGCCGGTATCGACAAcaaatggttgttttttaaa
gaaagttacCGATCCGGTTTTTCATGAAAGGTTCATCTCGAGAGTGTTCT
CGttccttttataagaaaatttgaatggaaGTTTCAAATCTCTCGTTGAG
GTGGTTCAGAAGAGTTCTGGCTCAAACTTTCCTGCCGCTGTGCAAATCTT
TGGTGCAGCATTTATGGCACTCAACTTCTCATCAATAATGAAAACTTTCG
GCTTCGTACCGATGCCTATTGTCATCGGGCCCACTGGTACGACGAAATCA
ACGATTACAAAACTAGTGATGCGGTCTGTTGGTGTCACCAGTAACATCTA
TGATCCTACATACGCTTCAATGGCAGAGTTGGTTGCATCAGCCCCGATCC
CTCTGCTGTGGGAAGACGCTgagaatttttctgttttgggAGAGATGGCT
ATGCTTGTATACAATAACtcaCAACGCTCAAAATGCGATAAAGGTGCCGT
ACAGGCAGGTCCACCCTTGACAATGCCGGTATCGACAAcaaatggttgtt
ttttaaagaaagttacCGATCCGGTTTTTCATGAAAGGTTCATCTCGAGA
GTGTTCTCGttccttttataagaaaatttgaatggaaGTTTCAAATCTCT
CGTTGAGGTGGTTCAGAAGAGTTCTGGCTCAAACTTTCCTGCCGCTGTGC
AAATCTTTGGTGCAGCATTTATGGCACTCAACTTCTCATCAATAATGAAA
ACTTTCGGCTTCGTACCGATGCCTATTGTCATCGGGCCCACTGGTACGAC
GAAATCAACGATTACAAAACTAGTGATGCGGTCTGTTGGTGTCACCAGTA
ACATCTATGATCCTACATACGCTTCAATGGCAGAGTTGGTTGCATCAGCC
CCGATCCCTCTGCTGTGGGAAGACGCTgagaatttttctgttttgggAGA
GATGGCTATGCTTGTATACAATAACtcaCAACGCTCAAAATGCGATAAAG
GTGCCGTACAGGCAGGTCCACCCTTGACAATGCCGGTATCGACAAcaaat
ggttgttttttaaagaaagttacCGATCCGGTTTTTCATGAAAGGTTCAT
CTCGAGAGTGTTCTCGttccttttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044351-exon-sc0005432-1491911889:610..847 | TCONS_00044351-exon-sc0005432-1491911889:610..847 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1510915933:610..847 | TCONS_00044351-exon-sc0005432-1510915933:610..847 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1575043694:610..847 | TCONS_00044351-exon-sc0005432-1575043694:610..847 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1491911889:1033..1148 | TCONS_00044351-exon-sc0005432-1491911889:1033..1148 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1510915933:1033..1148 | TCONS_00044351-exon-sc0005432-1510915933:1033..1148 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1575043694:1033..1148 | TCONS_00044351-exon-sc0005432-1575043694:1033..1148 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1491911889:1536..1654 | TCONS_00044351-exon-sc0005432-1491911889:1536..1654 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1510915933:1536..1654 | TCONS_00044351-exon-sc0005432-1510915933:1536..1654 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1575043694:1536..1654 | TCONS_00044351-exon-sc0005432-1575043694:1536..1654 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1491911889:4286..4469 | TCONS_00044351-exon-sc0005432-1491911889:4286..4469 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1510915933:4286..4469 | TCONS_00044351-exon-sc0005432-1510915933:4286..4469 | Clytia hemisphaerica | exon |
| TCONS_00044351-exon-sc0005432-1575043694:4286..4469 | TCONS_00044351-exon-sc0005432-1575043694:4286..4469 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005432 | supercontig | sc0005432:610..4469 + |
Blast
The following BLAST results are available for this feature:
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