TCONS_00044348 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044348
Unique NameTCONS_00044348
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length264

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044348 ID=TCONS_00044348|Name=TCONS_00044348|organism=Clytia hemisphaerica|type=transcript|length=264bp
TTTTTGAGATCACCTAATCcatgtttaagattacctaatctttAATTGGG
ATTATACTGAATCCATGTTAATATGTTTTGGAGATCACCTAATCCctgtt
taagattacctaatctttAATTGGGATTATACTGAATCCATGTTAATATG
TTTTGGAGATCACCTAATCCctgtttaagattacctaatccttcacttaa
tctctgtttgggattacctaatctctGTTTGGGTTTACCTAATTCAAGCT
AATCCTTATCTTAG
Run BLAST on NCBI

transcript from alignment at sc0005426:3937..4200

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044348 ID=TCONS_00044348|Name=TCONS_00044348|organism=Clytia hemisphaerica|type=transcript|length=264bp|location=Sequence derived from alignment at sc0005426:3937..4200 (Clytia hemisphaerica)
CTAAGATAAGGATTAGCTTGAATTAGGTAAACCCAAACagagattaggta
atcccaaacagagattaagtgaaggattaggtaatcttaaacagGGATTA
GGTGATCTCCAAAACATATTAACATGGATTCAGTATAATCCCAATTaaag
attaggtaatcttaaacagGGATTAGGTGATCTCCAAAACATATTAACAT
GGATTCAGTATAATCCCAATTaaagattaggtaatcttaaacatgGATTA
GGTGATCTCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027981XLOC_027981Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044348-exon-sc0005426-1491911889:3937..4200TCONS_00044348-exon-sc0005426-1491911889:3937..4200Clytia hemisphaericaexon
TCONS_00044348-exon-sc0005426-1510915933:3937..4200TCONS_00044348-exon-sc0005426-1510915933:3937..4200Clytia hemisphaericaexon
TCONS_00044348-exon-sc0005426-1575043694:3937..4200TCONS_00044348-exon-sc0005426-1575043694:3937..4200Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005426supercontigsc0005426:3937..4200 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.812012	0.70006	0	1.6676	1.97664	2.38473	3.72093	1.56306	0	0	1.23533	2.87844	3.41633	1.05326	3.01415	4.56012	0.663437	6.57257	9.57541	0.597798	3.49902	1.32768	1.28902	4.64682	9.58812	2.5434	0.904794	0	1.94451
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044348 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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