TCONS_00044322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044322
Unique NameTCONS_00044322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1149

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044322 ID=TCONS_00044322|Name=TCONS_00044322|organism=Clytia hemisphaerica|type=transcript|length=1149bp
ttcgtttttttgaaaGGTTTATTTGAACAAAAACTTTAGGTCATCCTATA
ATacatgaaaaataatgaaaaatattatCAATTTAAAAACATCGTAATAT
AAAACAATGCAATTACTTTAGTCTGGATATGTGTTTGGAATGAGTTCTCT
GCTCTTTGATTCTGTGTTATTCGCAAGAgcaaatatcaagtaaacaagTT
ATGATTGGCTGAAAATAGTTTTTCGCGTACATTGGGACCAAAACAGAGAA
CTAAATTGAGACATACCATGTATGTACGTACTGTACTTTGGAATGTGCTC
AGAGCTATGTCTGTTCCTTAACTGCTATTTTCAATCAATGGAACTGTGAC
TCCTCGAAAGTTAggcaatagcgagtttatgtattcgagataaatcgatg
gcgacggtataaagcaaagctgacatggggccgaaatcgccgtccacttt
gctcgacgacggtaaaaacaccaagataccgaactttaaaattataaatt
aaGTTTCTAGTAAACCAATCAAAAAGGTGTAACATAAATATGTACAGGAA
AATCTCAAGATGTTTCAACTCAAGATGCAAAGTATCAGGTCGGCGATAAA
ATATATCACATTTCACAGTAAAGCCATGCATCTTCATCGAATGTTGAAAG
ATCGAAAATAACCAATCAACACTTCTGTTACATTTCAGAaaccattttct
caaaatcacAAATCCATAAAGTTATTAATCAACCGGCAACCGAATATCAA
ATCAGCTGCATGGATTCCAAAAACGTAAATCAACCAGACAGAACTCCATG
TCCAGTGAAAAAGAGTCTCCACAGAAAAACAGCAGGACCAGCAAACAACG
ATAAATGGATCACGTTTTACGAAACCCTCTCAAGATTGGATAAATGTTTT
CGAAAGCTTCGTAAATTTCCGATCGAACTTTGGCACCAGTTAATACGACT
TTACCGGAGACGAAGATGAGTAGTACGATTTTTGGATTCAACATACGGTA
AATGAGACCAGGGAAAAGTTCAGGCTCGTAGCTATGATAGAAAATAAACA
GAAGAAGTTTAATAGAAATAAGGGTCGAACTTTCAATTGTACAAACATGA
AACACCGTGCAAGTTAGTACTCgatatttcaaacaaattttcttgGAGG
Run BLAST on NCBI

transcript from alignment at sc0005366:2073..3221

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044322 ID=TCONS_00044322|Name=TCONS_00044322|organism=Clytia hemisphaerica|type=transcript|length=1149bp|location=Sequence derived from alignment at sc0005366:2073..3221 (Clytia hemisphaerica)
CCTCcaagaaaatttgtttgaaatatcGAGTACTAACTTGCACGGTGTTT
CATGTTTGTACAATTGAAAGTTCGACCCTTATTTCTATTAAACTTCTTCT
GTTTATTTTCTATCATAGCTACGAGCCTGAACTTTTCCCTGGTCTCATTT
ACCGTATGTTGAATCCAAAAATCGTACTACTCATCTTCGTCTCCGGTAAA
GTCGTATTAACTGGTGCCAAAGTTCGATCGGAAATTTACGAAGCTTTCGA
AAACATTTATCCAATCTTGAGAGGGTTTCGTAAAACGTGATCCATTTATC
GTTGTTTGCTGGTCCTGCTGTTTTTCTGTGGAGACTCTTTTTCACTGGAC
ATGGAGTTCTGTCTGGTTGATTTACGTTTTTGGAATCCATGCAGCTGATT
TGATATTCGGTTGCCGGTTGATTAATAACTTTATGGATTTgtgattttga
gaaaatggttTCTGAAATGTAACAGAAGTGTTGATTGGTTATTTTCGATC
TTTCAACATTCGATGAAGATGCATGGCTTTACTGTGAAATGTGATATATT
TTATCGCCGACCTGATACTTTGCATCTTGAGTTGAAACATCTTGAGATTT
TCCTGTACATATTTATGTTACACCTTTTTGATTGGTTTACTAGAAACtta
atttataattttaaagttcggtatcttggtgtttttaccgtcgtcgagca
aagtggacggcgatttcggccccatgtcagctttgctttataccgtcgcc
atcgatttatctcgaatacataaactcgctattgccTAACTTTCGAGGAG
TCACAGTTCCATTGATTGAAAATAGCAGTTAAGGAACAGACATAGCTCTG
AGCACATTCCAAAGTACAGTACGTACATACATGGTATGTCTCAATTTAGT
TCTCTGTTTTGGTCCCAATGTACGCGAAAAACTATTTTCAGCCAATCATA
ActtgtttacttgatatttgcTCTTGCGAATAACACAGAATCAAAGAGCA
GAGAACTCATTCCAAACACATATCCAGACTAAAGTAATTGCATTGTTTTA
TATTACGATGTTTTTAAATTGataatatttttcattatttttcatgtATT
ATAGGATGACCTAAAGTTTTTGTTCAAATAAACCtttcaaaaaaacgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027955XLOC_027955Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044322-exon-sc0005366-1491911889:2073..3221TCONS_00044322-exon-sc0005366-1491911889:2073..3221Clytia hemisphaericaexon
TCONS_00044322-exon-sc0005366-1510915933:2073..3221TCONS_00044322-exon-sc0005366-1510915933:2073..3221Clytia hemisphaericaexon
TCONS_00044322-exon-sc0005366-1575043694:2073..3221TCONS_00044322-exon-sc0005366-1575043694:2073..3221Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005366supercontigsc0005366:2073..3221 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.33312	8.72484	34.0747	38.7176	10.2835	7.8077	10.3567	10.9235	10.9151	11.607	9.20933	9.0036	8.67797	12.0068	3.85092	5.00962	6.12143	5.66995	3.22091	4.96638	8.2245	7.85157	11.1252	9.0763	10.9592	10.9051	7.3385	2.71572	7.13302	8.36258
Blast
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BLAST of TCONS_00044322 vs. Swiss-Prot (Human)
Match: TBP (TATA-box-binding protein OS=Homo sapiens GN=TBP PE=1 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 5.538e-28
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -3 
Query:  863 YHSYEPELFPGLIYRMLNPKIVLLIFVSGKVVLTGAKVRSEIYEAFENIYPILRGFRKT 1039
            + SYEPELFPGLIYRM+ P+IVLLIFVSGKVVLTGAKVR+EIYEAFENIYPIL+GFRKT
Sbjct:  280 FSSYEPELFPGLIYRMIKPRIVLLIFVSGKVVLTGAKVRAEIYEAFENIYPILKGFRKT 338
The following BLAST results are available for this feature:
BLAST of TCONS_00044322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBP5.538e-2888.14TATA-box-binding protein OS=Homo sapiens GN=TBP PE... [more]
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