TCONS_00044318 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044318
Unique NameTCONS_00044318
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length372

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044318 ID=TCONS_00044318|Name=TCONS_00044318|organism=Clytia hemisphaerica|type=transcript|length=372bp
CACATTCATTAAGACCATTTGGGAGAAGTGTTTTAAGTTTGTATTGCCAA
AACCTCTCCCGTTCACGGGTATCTTCAAAATTTCTACCCTGATCGATAAG
GGTAAATTCAAAATCAGAAAACCCAGAATGGCCGGGGAGATCAAAATGAT
TATGAAGATGTTACTGACAAACAATGTCAGTCTTATGCCGTTTATTGCAG
GAGTTATAgtttgcaaatctagccctaaATTGAGTTGTACAGCTACCGAC
ATACTGAATCCCACAAGTTTTGCAAGTAAGAAGATAGACGACATTAGTTG
AGCTGCAATTCAGATGAACTCCTCTAATGTCATAGGTCTTATTCTTGTTA
TCTGCAAAACCTGAGGTTTTCT
Run BLAST on NCBI

transcript from alignment at sc0005360:4197..4568

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044318 ID=TCONS_00044318|Name=TCONS_00044318|organism=Clytia hemisphaerica|type=transcript|length=372bp|location=Sequence derived from alignment at sc0005360:4197..4568 (Clytia hemisphaerica)
AGAAAACCTCAGGTTTTGCAGATAACAAGAATAAGACCTATGACATTAGA
GGAGTTCATCTGAATTGCAGCTCAACTAATGTCGTCTATCTTCTTACTTG
CAAAACTTGTGGGATTCAGTATGTCGGTAGCTGTACAACTCAATttaggg
ctagatttgcaaacTATAACTCCTGCAATAAACGGCATAAGACTGACATT
GTTTGTCAGTAACATCTTCATAATCATTTTGATCTCCCCGGCCATTCTGG
GTTTTCTGATTTTGAATTTACCCTTATCGATCAGGGTAGAAATTTTGAAG
ATACCCGTGAACGGGAGAGGTTTTGGCAATACAAACTTAAAACACTTCTC
CCAAATGGTCTTAATGAATGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027951XLOC_027951Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044318-exon-sc0005360-1491911889:4197..4568TCONS_00044318-exon-sc0005360-1491911889:4197..4568Clytia hemisphaericaexon
TCONS_00044318-exon-sc0005360-1510915933:4197..4568TCONS_00044318-exon-sc0005360-1510915933:4197..4568Clytia hemisphaericaexon
TCONS_00044318-exon-sc0005360-1575043694:4197..4568TCONS_00044318-exon-sc0005360-1575043694:4197..4568Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005360supercontigsc0005360:4197..4568 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.8535	1.48895	0	0	2.29179	0.944048	0.684878	0	0.976538	0.893965	0.817357	0.479869	1.35248	0.634637	0.525147	1.32471	0.462744	1.45268	1.43352	1.33324	0.373364	0.660301	0	0	0.701515	0.637024	0.24158	1.22866
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044318 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top