TCONS_00044309 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044309
Unique NameTCONS_00044309
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044309 ID=TCONS_00044309|Name=TCONS_00044309|organism=Clytia hemisphaerica|type=transcript|length=551bp
AGTATTGAGAATAAATCTACATTTTTAAATCtcattaaagtaaaatttta
cgtgcatgtgaaaaaagcttcaGATATATAAATATTCCTTCGCACTAGTG
AAAAGCGAACATTTATTTTTACGCGGCTTTAAAAAAAGCTGTGACGCCTA
AAATAGGTTGGGTGGTCGTAACAAGATGTCCACGAGGTTGCCGCTGCTGT
TTCACCATAGAACTATCATCAGATAGAATAAATACAAGATTTGTTCCTCA
AAATGAAGCGTGGCTGTAAGGGGTCCCTTAGTTGCAATGGGAATTCTGTT
ATACGTGTGTAATAATTTCTTTGTTGTCATCGTATATTAATTGCATGTTT
TCAAATGCTTGATtagattcttttgaattctcgaaaattatgaatataat
tcaattattttcaaatggAATTTCGGGCACATCGGTCCCatcagtaaaaa
taaaaattatgaattcgAAATCAGCTACTTTCACAGATTCAGCGgtgaaa
actatttgaaaaggCACTTCTTAGGAAAGAAATCTAGCTGTCAAGTTTTC
A
Run BLAST on NCBI

transcript from alignment at sc0005342:4849..5399

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044309 ID=TCONS_00044309|Name=TCONS_00044309|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at sc0005342:4849..5399 (Clytia hemisphaerica)
TGAAAACTTGACAGCTAGATTTCTTTCCTAAGAAGTGccttttcaaatag
ttttcacCGCTGAATCTGTGAAAGTAGCTGATTTcgaattcataattttt
atttttactgatGGGACCGATGTGCCCGAAATTccatttgaaaataattg
aattatattcataattttcgagaattcaaaagaatctaATCAAGCATTTG
AAAACATGCAATTAATATACGATGACAACAAAGAAATTATTACACACGTA
TAACAGAATTCCCATTGCAACTAAGGGACCCCTTACAGCCACGCTTCATT
TTGAGGAACAAATCTTGTATTTATTCTATCTGATGATAGTTCTATGGTGA
AACAGCAGCGGCAACCTCGTGGACATCTTGTTACGACCACCCAACCTATT
TTAGGCGTCACAGCTTTTTTTAAAGCCGCGTAAAAATAAATGTTCGCTTT
TCACTAGTGCGAAGGAATATTTATATATCtgaagcttttttcacatgcac
gtaaaattttactttaatgaGATTTAAAAATGTAGATTTATTCTCAATAC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027942XLOC_027942Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044309-exon-sc0005342-1491911889:4849..5399TCONS_00044309-exon-sc0005342-1491911889:4849..5399Clytia hemisphaericaexon
TCONS_00044309-exon-sc0005342-1510915933:4849..5399TCONS_00044309-exon-sc0005342-1510915933:4849..5399Clytia hemisphaericaexon
TCONS_00044309-exon-sc0005342-1575043694:4849..5399TCONS_00044309-exon-sc0005342-1575043694:4849..5399Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005342supercontigsc0005342:4849..5399 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.83062	1.11459	0.583407	0.946327	1.49816	1.56204	2.02338	1.56587	1.35753	1.59885	0.633592	1.30056	1.4997	1.85525	0.592807	0.834978	1.33048	0.723889	1.20765	0.946381	2.62174	2.32505	0	0.652187	0.949011	1.40737	0.863806	0.559401	0.865293	0.821159
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044309 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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