TCONS_00044293 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044293
Unique NameTCONS_00044293
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length645

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044293 ID=TCONS_00044293|Name=TCONS_00044293|organism=Clytia hemisphaerica|type=transcript|length=645bp
CTCTTAGGGATTGCTGTGATGTTTCGATGTTAGATTGAGCAGCTGCTGAA
TTGTTCATTAACGTTAGTGTTTCTGCTGATTTATCAAAAGCATCATCACC
TGGAATGtgCTGATTTGGACGCACAAGGAATCGATGAGTCGGATTGTGAC
GAGCAGGATGCCCTTAGCACAGGAGTTGATGCTGTAAAGACTTACACATG
CTTTTGTAACATGGCTTGGCAATTGAAGGTGGATGCCACACGCCACACAC
TGGTTCCTGGCACTTCTTATCTAAAGTGAGATCAACTTCCATCGTTCTTT
GTCCTAAGGTGATGTTTCGATCTTATCAGTGCTCTCGCAACATTCAGAAG
AATCAATTTCCATTGTTGTTTGGTCTAAAAGATCCAAGGTGCTCTTTCCA
ATCCTTTCGAACTTGCCATCTGGTCAAGCAAGTCTTGATGACATTGTCAG
GAAGATGGTTTGTGCACTTTTTGGATACGTCCTTGAAAAAGGTAAACGCT
CTTTCCTCATTTTCCGTATTGCAAGATGTAAGCGCTACCAAACGATACTG
GATCGCAGCCTCTCTCACAATATTGTGTTCGTATTGACCGTAGAGTTTTC
TCGTAGTCAATTTTTTACCGATCGGCATCAATTTCTTCATCATCA
Run BLAST on NCBI

transcript from alignment at sc0005312:1233..3767-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044293 ID=TCONS_00044293|Name=TCONS_00044293|organism=Clytia hemisphaerica|type=transcript|length=2535bp|location=Sequence derived from alignment at sc0005312:1233..3767- (Clytia hemisphaerica)
CTCTTAGGGATTGCTGTGATGTTTCGATGTTAGATTGAGCAGCTGCTGAA
TTGTTCATTAACGTTAGTGTTTCTGCTGATTTATCAAAAGCATCATCACC
TGGAATGTGGTAAATAAAATTTTATTGTATGTTATTGTTTTGAACCATTT
TTTTCATTTACTGGGTAGAGGGATTATTATTCAAGCATTGTTGAAGTCAG
TGAGTTGTAATTCATATATCATCCAAATAAACTCCTATAAGTTTTTTTTT
ACCTTGTATAGCTGATTTGGACGCACAAGGAATCGATGAGTCGGATTGTG
ACGAGCAGGATGCCCTTAGCACAGGAGTTGATGCTGTAAAGGTAAAAATT
CAATGTGACATTTTTTACTGTTTGCAAACTTTTTCCTTTATGAAATTACA
CAATACAATAAATTTTATCCTCAAAAATTATACGTTTTTATAAACAATTG
CCAATTGTTTGATAGAAATTTAAAATCTGTCAGTACTGTTTGCAAACTAT
TGAATAAATGTTTCTAGACTTACACATGCTTTTGTAACATGGCTTGGCAA
TTGAAGGTGGATGCCACACGCCACACACTGGTTCCTGGCACTTCTTATCT
AAAGGTATGTGATTTTGTTATTGTTGATGTAACTTTAGAAATTTAGCTGA
AACTTCAGTCTTTCGCACTCAGGATTTGGTTATTTAAAATGATTTCTCTT
TCTGAAATAAAATTTCTGCTTTATAAACCGAGAATAAAAGTATTCTTAGG
ATACCTTTGATACAACTCATATTTGGTGTGGATAGAGTCAGTTTGTTGAA
TGGAGTTGTAGGCGTCTTGTTGAGTTGTTTTGATGTAAACATAGATCTTT
GTGAAAACGGTGATTGTTTTTCTGTAAATGTAAATTTTAATTGTAAAGTT
ACTTTGCTTTTTCTCTTATTAGGCATAGAGGAAATATAATGTTACATCTG
TCATTCACACTCACTTGATTTTTCAGGTGATATTTCAGTATTGTTACTGT
TTTCATTACTTCCAGTGAGATCAACTTCCATCGTTCTTTGTCCTAAGGTA
AGAAGTTACGACTTGAAAATATGTCTTTGAATTGAAAGCTTCATGAATAA
AATGATATTTCAGCACATATGCAATATTACTTTCCACCTGTTAAGATCTA
CCTCTACACTTGAAACTTAATTCTTTACCTCCTTTCTCAGGTGATGTTTC
GATCTTATCAGTGCTCTCGCAACATTCAGAAGAATCAATTTCCATTGTTG
TTTGGTCTAAAAGGTAAGAAATTTGATATTCCTGTTACGAGCCATTCTAT
GGGAATTACAGTGAGTGACTGCCTCTAACTCTTTGATGGGCTTTGGGAGG
AAAAATCAAATGTCAATGTTGTACCGTTTTCTTTTGATTCTGAGACATCA
GCAAATTTGAACAGTCCACGTTTAGCCCTAGAATGTTTGTTCCCCGCTTG
TTTCTTGCTTGCCTTCTTCGTCGTGTTTATGTTGCTTACTGACGTTTGCT
TGTTGCTTGCTTTCTTTGACTATAAGGATAAATTTAGGCAAATAATAGTT
TGGTTGACATTATTTTCACAGGAATTCGATTTTGTCGATCTCAGCTATAT
AAGTGTATATTCAGTTTGACTGCTAGGATGAAACTTGAGAAAATTCATTG
TTTTTACCAAATCTTTCCCTTCATATGGATTGGGTTTGTTTAAGCTTGAA
ACTATTCTCTTCTTTCCATCTTCTTCCAACCTCAAGAATGCAGGTAGTTT
TCTGTCCTCCAATTTGCTCCATTTATCTGCAAGATACCTAATTAATAGAA
AATATAGCCTGATTTATTGATAATTCCAATCTTGGTAGCCTTTTTGATTG
AGGGAGGGTGCAGTCGCAAAAACTCATTAAAATGGCATTGTTTGTTGTTG
CCCATCATTTATATTAGAGTTGATTAGTAGAGTAAGACTAAGACTAGATT
ATTTTTCATATCCAGTCGTATACCGTATATTTCTGATTTTCTCAAATACT
CACTTGTGTTCTTTTTCTGTGGAGGAGCTTCTGAAATGATGGATCGATGG
ATAGGTTTTGTGGTGGGCTTTTGACAAATCGAAAAATTCAATACCATTGC
GTTTTTCCTCCCAAACGTCACATTCAAGGAAATCGCTGATTCTCTCCAGA
TGGGCCTGCCAATCTGACACGTTATCCTTGATTAAATCAAAAGGGACAAC
AGTGTTAGTTCTTTCCTCTTTCAGTTTTTGACCATGTTCACTGATTGAAT
TTTTGCCTGTGCTTATTTTAGATCCAAGGTGCTCTTTCCAATCCTTTCGA
ACTTGCCATCTGGTCAAGCAAGTCTTGATGACATTGTCAGGAAGATGGTT
TGTGCACTTTTTGGATACGTCCTTGAAAAAGGTAAACGCTCTTTCCTCAT
TTTCCGTATTGCAAGATGTAAGCGCTACCAAACGATACTGGATCGCAGCC
TCTCTCACAATATTGTGTTCGTATTGACCGTAGAGTTTTCTCGTAGTCAA
TTTTTTACCGATCGGCATCAATTTCTTCATCATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027929XLOC_027929Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044293-exon-sc0005312-1575043694:3659..3767TCONS_00044293-exon-sc0005312-1575043694:3659..3767Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1575043694:3427..3506TCONS_00044293-exon-sc0005312-1575043694:3427..3506Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1575043694:3164..3250TCONS_00044293-exon-sc0005312-1575043694:3164..3250Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1575043694:2721..2752TCONS_00044293-exon-sc0005312-1575043694:2721..2752Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1575043694:2505..2577TCONS_00044293-exon-sc0005312-1575043694:2505..2577Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1575043694:1233..1496TCONS_00044293-exon-sc0005312-1575043694:1233..1496Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1510915933:3659..3767TCONS_00044293-exon-sc0005312-1510915933:3659..3767Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1510915933:3427..3506TCONS_00044293-exon-sc0005312-1510915933:3427..3506Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1510915933:3164..3250TCONS_00044293-exon-sc0005312-1510915933:3164..3250Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1510915933:2721..2752TCONS_00044293-exon-sc0005312-1510915933:2721..2752Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1510915933:2505..2577TCONS_00044293-exon-sc0005312-1510915933:2505..2577Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1510915933:1233..1496TCONS_00044293-exon-sc0005312-1510915933:1233..1496Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1491911889:3659..3767TCONS_00044293-exon-sc0005312-1491911889:3659..3767Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1491911889:3427..3506TCONS_00044293-exon-sc0005312-1491911889:3427..3506Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1491911889:3164..3250TCONS_00044293-exon-sc0005312-1491911889:3164..3250Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1491911889:2721..2752TCONS_00044293-exon-sc0005312-1491911889:2721..2752Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1491911889:2505..2577TCONS_00044293-exon-sc0005312-1491911889:2505..2577Clytia hemisphaericaexon
TCONS_00044293-exon-sc0005312-1491911889:1233..1496TCONS_00044293-exon-sc0005312-1491911889:1233..1496Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005312supercontigsc0005312:1233..3767 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0793495	0	0	0	0	0	0	1.24469	0	1.00223	0	0	1.41736	0	0.0495852	0	0.06261	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044293 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top