TCONS_00044280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044280
Unique NameTCONS_00044280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044280 ID=TCONS_00044280|Name=TCONS_00044280|organism=Clytia hemisphaerica|type=transcript|length=673bp
AGCTGAAGTTGATAATGCAGTTTTTGAAGTGGTCAACGATGTTGATAAGA
CCCCTTCCACCCTCTTTTCTCGGGAGGTAGAGTCTTGTTACGTCACTTTG
GTTGTGCATCACGTGGAATGATTGCAAGACTTTTCTCGTTTCGCGGTCGA
TGCTCTCTAGCTCAGTGATCGTCCAGTCCAGTACAGGAAAGCCATACGAC
AGAGCTGGGACGGCATAATAGTTGATGGCGTATATTGTGTTGAGGCTGTT
GAGTTCGCTTTTGAGTAGCATCTTCAGTCTTTTAAAGTACTCATTTTTGA
GAGCTGATTTGGTGTATTTGTCAGTAAGTTGGTGCTCATTGAACCCGAGG
TATTTGTATTGTTTGTTTTGGTCTAGGGTTTTTAGTATCTCGCCATTGTC
GAGTACGATGTTGTCGcttttcgtgatttttccccGTTTGATTGTCACTT
TATTGCACTTTTCAATTCCGAAATTCATCTGGATGTCGTCGCTGAATGTT
TTGACCAGTTTGATTTGGTTGTTGAGTTGTTGATCATTCGCAGCATACAG
TTTCAAGTCATCCATAAAGAGTAGATGAGATATCGTTGTCTCTTTGTTAA
ATCGATAACCGAGTTTGCTATCTTTTAGAAGCCAGGATAGTGGAAGTAAC
GAAAGGATAAACAATGTACCTGA
Run BLAST on NCBI

protein sequence of TCONS_00044280-protein

>TCONS_00044280-protein ID=TCONS_00044280-protein|Name=TCONS_00044280-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
SGTLFILSLLPLSWLLKDSKLGYRFNKETTISHLLFMDDLKLYAANDQQL
NNQIKLVKTFSDDIQMNFGIEKCNKVTIKRGKITKSDNIVLDNGEILKTL
DQNKQYKYLGFNEHQLTDKYTKSALKNEYFKRLKMLLKSELNSLNTIYAI
NYYAVPALSYGFPVLDWTITELESIDRETRKVLQSFHVMHNQSDVTRLYL
PRKEGGRGLINIVDHFKNCIINFS
Run BLAST on NCBI

transcript from alignment at sc0005291:116..788

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044280 ID=TCONS_00044280|Name=TCONS_00044280|organism=Clytia hemisphaerica|type=transcript|length=673bp|location=Sequence derived from alignment at sc0005291:116..788 (Clytia hemisphaerica)
TCAGGTACATTGTTTATCCTTTCGTTACTTCCACTATCCTGGCTTCTAAA
AGATAGCAAACTCGGTTATCGATTTAACAAAGAGACAACGATATCTCATC
TACTCTTTATGGATGACTTGAAACTGTATGCTGCGAATGATCAACAACTC
AACAACCAAATCAAACTGGTCAAAACATTCAGCGACGACATCCAGATGAA
TTTCGGAATTGAAAAGTGCAATAAAGTGACAATCAAACggggaaaaatca
cgaaaagCGACAACATCGTACTCGACAATGGCGAGATACTAAAAACCCTA
GACCAAAACAAACAATACAAATACCTCGGGTTCAATGAGCACCAACTTAC
TGACAAATACACCAAATCAGCTCTCAAAAATGAGTACTTTAAAAGACTGA
AGATGCTACTCAAAAGCGAACTCAACAGCCTCAACACAATATACGCCATC
AACTATTATGCCGTCCCAGCTCTGTCGTATGGCTTTCCTGTACTGGACTG
GACGATCACTGAGCTAGAGAGCATCGACCGCGAAACGAGAAAAGTCTTGC
AATCATTCCACGTGATGCACAACCAAAGTGACGTAACAAGACTCTACCTC
CCGAGAAAAGAGGGTGGAAGGGGTCTTATCAACATCGTTGACCACTTCAA
AAACTGCATTATCAACTTCAGCT

Coding sequence (CDS) from alignment at sc0005291:116..788

>TCONS_00044280 ID=TCONS_00044280|Name=TCONS_00044280|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0005291:116..788 (Clytia hemisphaerica)
TCAGGTACATTGTTTATCCTTTCGTTACTTCCACTATCCTGGCTTCTAAA
AGATAGCAAACTCGGTTATCGATTTAACAAAGAGACAACGATATCTCATC
TACTCTTTATGGATGACTTGAAACTGTATGCTGCGAATGATCAACAACTC
AACAACCAAATCAAACTGGTCAAAACATTCAGCGACGACATCCAGATGAA
TTTCGGAATTGAAAAGTGCAATAAAGTGACAATCAAACggggaaaaatca
cgaaaagCGACAACATCGTACTCGACAATGGCGAGATACTAAAAACCCTA
GACCAAAACAAACAATACAAATACCTCGGGTTCAATGAGCACCAACTTAC
TGACAAATACACCAAATCAGCTCTCAAAAATGAGTACTTTAAAAGACTGA
AGATGCTACTCAAAAGCGAACTCAACAGCCTCAACACAATATACGCCATC
AACTATTATGCCGTCCCAGCTCTGTCGTATGGCTTTCCTGTACTGGACTG
GACGATCACTGAGCTAGAGAGCATCGACCGCGAAACGAGAAAAGTCTTGC
AATCATTCCACGTGATGCACAACCAAAGTGACGTAACAAGACTCTACCTC
CCGAGAAAAGAGGGTGGAAGGGGTCTTATCAACATCGTTGACCACTTCAA
AAACTGCATTATCAACTTCAGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027916XLOC_027916Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044280-exon-sc0005291-1491911889:116..788TCONS_00044280-exon-sc0005291-1491911889:116..788Clytia hemisphaericaexon
TCONS_00044280-exon-sc0005291-1510915933:116..788TCONS_00044280-exon-sc0005291-1510915933:116..788Clytia hemisphaericaexon
TCONS_00044280-exon-sc0005291-1575043694:116..788TCONS_00044280-exon-sc0005291-1575043694:116..788Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044280-proteinTCONS_00044280-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005291supercontigsc0005291:116..788 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.211617	0.259908	0.346291	0	0	0.0814801	0.0983022	0	0	0.159619	0	0.0509224	0	0	0.0434169	0.046593	0	0	0	0	0	0.108176	0	0	1.35044	0.512859	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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