TCONS_00044279 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044279
Unique NameTCONS_00044279
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length466

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044279 ID=TCONS_00044279|Name=TCONS_00044279|organism=Clytia hemisphaerica|type=transcript|length=466bp
cagatatgcaacagtcccatgttttcaCCAATCGTccaaagttagagcag
ttgacggtgtctattgttgattttgatatttagtCAGGCTTATTATAAAG
ACAGCAATTGTCCTTTCCTTGTAGGGTTTCATTGTAATTAAGATAGTTTA
AATTCTGTATCAATTGTTTACAAAAACATTCATTGACATGGTTGCTGTTA
AAAGCAAAAAGCTGAAATTTGATACAATTGTTCCTTGGCTGGTTTTCATA
ttgattaaattttgatttttgagtctGGAGACCAGTTCTAGTCCCAAAAA
GCAATGGGCCTGAAATCAACTGAAATGATAATCGTTTTGGGGTCGACTGA
AGTAGTAGTAGATAGTTGACTGAAACGTCTCTCAATCAACagagaaaaga
aaatattagcAAATTATGCTGTAGAATTGTCCATAATACAAAACTGAAAG
ATCTAACTCTTTTAAA
Run BLAST on NCBI

transcript from alignment at sc0005289:320..785

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044279 ID=TCONS_00044279|Name=TCONS_00044279|organism=Clytia hemisphaerica|type=transcript|length=466bp|location=Sequence derived from alignment at sc0005289:320..785 (Clytia hemisphaerica)
TTTAAAAGAGTTAGATCTTTCAGTTTTGTATTATGGACAATTCTACAGCA
TAATTTgctaatattttcttttctctGTTGATTGAGAGACGTTTCAGTCA
ACTATCTACTACTACTTCAGTCGACCCCAAAACGATTATCATTTCAGTTG
ATTTCAGGCCCATTGCTTTTTGGGACTAGAACTGGTCTCCagactcaaaa
atcaaaatttaatcaaTATGAAAACCAGCCAAGGAACAATTGTATCAAAT
TTCAGCTTTTTGCTTTTAACAGCAACCATGTCAATGAATGTTTTTGTAAA
CAATTGATACAGAATTTAAACTATCTTAATTACAATGAAACCCTACAAGG
AAAGGACAATTGCTGTCTTTATAATAAGCCTGactaaatatcaaaatcaa
caatagacaccgtcaactgctctaactttggACGATTGGtgaaaacatgg
gactgttgcatatctg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027915XLOC_027915Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044279-exon-sc0005289-1491911889:320..785TCONS_00044279-exon-sc0005289-1491911889:320..785Clytia hemisphaericaexon
TCONS_00044279-exon-sc0005289-1510915933:320..785TCONS_00044279-exon-sc0005289-1510915933:320..785Clytia hemisphaericaexon
TCONS_00044279-exon-sc0005289-1575043694:320..785TCONS_00044279-exon-sc0005289-1575043694:320..785Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005289supercontigsc0005289:320..785 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.138046	0.134616	0.468907	0.152917	0.372325	0	0	0.166154	0	0	0	0.551626	0.367239	1.0488	0	0.252363	1.13993	0.318653	0	0.614235	0.400411	0.58592	0.15828	0.2878	0	0.132277	0.378576	0	0.30644	0.780534
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044279 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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