TCONS_00044277 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044277
Unique NameTCONS_00044277
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044277 ID=TCONS_00044277|Name=TCONS_00044277|organism=Clytia hemisphaerica|type=transcript|length=359bp
ACCTGAGGTGAATGGAAAGTTATCTACATTTTCTTGCAACTTTGCCATAT
CGAATTCCGGGTTTTTGAAATATCTGGTGAAGAGTTTTTTACAACAATTC
AAAGCCACAGTGCATACATCACGAACCATATCGGTGAATGGATTAAAACT
ATATACATCATAAAGGCTTGCCAATAGAGTCATACCAGTATACCCAGTTT
CTTTTGCGCGTTGTTTCTTTCTGGCATACGATTCTGAAAATTCGATTTCT
TCCATCACATCGTATTCGTCATTCATTTCCCTCTTGTTCCACGGACTGGT
AAAGTGATGGCGATTATTGAGGTAGTATTTGGTTGTGCTGCCTGATACTG
ACTCGCCtg
Run BLAST on NCBI

protein sequence of TCONS_00044277-protein

>TCONS_00044277-protein ID=TCONS_00044277-protein|Name=TCONS_00044277-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
GESVSGSTTKYYLNNRHHFTSPWNKREMNDEYDVMEEIEFSESYARKKQR
AKETGYTGMTLLASLYDVYSFNPFTDMVRDVCTVALNCCKKLFTRYFKNP
EFDMAKLQENVDNFPFTSG
Run BLAST on NCBI

transcript from alignment at sc0005282:4161..4519

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044277 ID=TCONS_00044277|Name=TCONS_00044277|organism=Clytia hemisphaerica|type=transcript|length=359bp|location=Sequence derived from alignment at sc0005282:4161..4519 (Clytia hemisphaerica)
caGGCGAGTCAGTATCAGGCAGCACAACCAAATACTACCTCAATAATCGC
CATCACTTTACCAGTCCGTGGAACAAGAGGGAAATGAATGACGAATACGA
TGTGATGGAAGAAATCGAATTTTCAGAATCGTATGCCAGAAAGAAACAAC
GCGCAAAAGAAACTGGGTATACTGGTATGACTCTATTGGCAAGCCTTTAT
GATGTATATAGTTTTAATCCATTCACCGATATGGTTCGTGATGTATGCAC
TGTGGCTTTGAATTGTTGTAAAAAACTCTTCACCAGATATTTCAAAAACC
CGGAATTCGATATGGCAAAGTTGCAAGAAAATGTAGATAACTTTCCATTC
ACCTCAGGT

Coding sequence (CDS) from alignment at sc0005282:4161..4519

>TCONS_00044277 ID=TCONS_00044277|Name=TCONS_00044277|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0005282:4161..4519 (Clytia hemisphaerica)
GGCGAGTCAGTATCAGGCAGCACAACCAAATACTACCTCAATAATCGCCA
TCACTTTACCAGTCCGTGGAACAAGAGGGAAATGAATGACGAATACGATG
TGATGGAAGAAATCGAATTTTCAGAATCGTATGCCAGAAAGAAACAACGC
GCAAAAGAAACTGGGTATACTGGTATGACTCTATTGGCAAGCCTTTATGA
TGTATATAGTTTTAATCCATTCACCGATATGGTTCGTGATGTATGCACTG
TGGCTTTGAATTGTTGTAAAAAACTCTTCACCAGATATTTCAAAAACCCG
GAATTCGATATGGCAAAGTTGCAAGAAAATGTAGATAACTTTCCATTCAC
CTCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027913XLOC_027913Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044277-exon-sc0005282-1491911889:4161..4519TCONS_00044277-exon-sc0005282-1491911889:4161..4519Clytia hemisphaericaexon
TCONS_00044277-exon-sc0005282-1510915933:4161..4519TCONS_00044277-exon-sc0005282-1510915933:4161..4519Clytia hemisphaericaexon
TCONS_00044277-exon-sc0005282-1575043694:4161..4519TCONS_00044277-exon-sc0005282-1575043694:4161..4519Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044277-proteinTCONS_00044277-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005282supercontigsc0005282:4161..4519 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.159931	0.434053	0.212768	0	0	0	0	1.48841	0.694357	3.07877	1.41288	0.77742	0.193789	0.827048	0.223691	0.699344	0.537385	0	0	0.788683	0	0	0.370218	0.896323	0	1.51113	0.346116	1.47923	0.339121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044277 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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