TCONS_00044273 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044273
Unique NameTCONS_00044273
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044273 ID=TCONS_00044273|Name=TCONS_00044273|organism=Clytia hemisphaerica|type=transcript|length=404bp
AACCCACACCCCCCTGATGATACATGGCACATCCCAAACTAGGCGGTCCC
TGGACTAAACATCCTCCGCGTATGAAAATGAGGTAAAACCTTGGGACCAA
AAAGCGCCTTGACATCGTTGATTGGCCGTCGTCGTTGGCCGGTTGACGTC
ACCTAAGAAacgagagagaaaaaaaaaaacgaaagaaagCAAAGAAAGTA
AGAGCTGGTGCTCATCCTTATTTTGGGCAAGTAAGGGCGGGTGGGAAATT
CCAAAACATTatgattttaaaagaatgtGTTTCGATTTTCGGTCACGGTA
TATAGGctaaaattcaagatggccacCAAGCGGGCGTATGTTTGATGCGT
AAGGGCGTAAGAGCCGTGATGGGCGTAGCGTTAGTCGCTTCCTCGAAATT
AACA
Run BLAST on NCBI

transcript from alignment at sc0005277:418..821

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044273 ID=TCONS_00044273|Name=TCONS_00044273|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at sc0005277:418..821 (Clytia hemisphaerica)
TGTTAATTTCGAGGAAGCGACTAACGCTACGCCCATCACGGCTCTTACGC
CCTTACGCATCAAACATACGCCCGCTTGgtggccatcttgaattttagCC
TATATACCGTGACCGAAAATCGAAACacattcttttaaaatcatAATGTT
TTGGAATTTCCCACCCGCCCTTACTTGCCCAAAATAAGGATGAGCACCAG
CTCTTACTTTCTTTGctttctttcgtttttttttttctctctcgtTTCTT
AGGTGACGTCAACCGGCCAACGACGACGGCCAATCAACGATGTCAAGGCG
CTTTTTGGTCCCAAGGTTTTACCTCATTTTCATACGCGGAGGATGTTTAG
TCCAGGGACCGCCTAGTTTGGGATGTGCCATGTATCATCAGGGGGGTGTG
GGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027909XLOC_027909Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044273-exon-sc0005277-1491911889:418..821TCONS_00044273-exon-sc0005277-1491911889:418..821Clytia hemisphaericaexon
TCONS_00044273-exon-sc0005277-1510915933:418..821TCONS_00044273-exon-sc0005277-1510915933:418..821Clytia hemisphaericaexon
TCONS_00044273-exon-sc0005277-1575043694:418..821TCONS_00044273-exon-sc0005277-1575043694:418..821Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005277supercontigsc0005277:418..821 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.9365	16.2551	8.74565	6.27701	88.8176	75.4196	67.3658	98.9802	10.1406	43.1571	23.3173	5.05616	18.0352	15.1765	21.2003	43.955	34.1902	22.9432	17.0193	21.7481	15.1104	7.62171	18.3107	19.5904	15.3966	36.7268	29.1195	34.3025	29.9099	16.2392
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044273 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top