TCONS_00044265 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044265
Unique NameTCONS_00044265
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044265 ID=TCONS_00044265|Name=TCONS_00044265|organism=Clytia hemisphaerica|type=transcript|length=347bp
AGTCAACGGCGATTGGGGCAAATGGGGAGGATTCAATTCTTGTAACAAAC
GATGTGGAGGAGGTCTACAAACGAGATACAGATCATGTAATAACCCAACA
CCTGCACATGGTGGAAAATCATGTCCTGGTTCTCCCGCTCACTCACAATC
ATGCAACACTCATAAATGTCCAGTCAATGGCAATTGGGGATCATGGGGTT
CATATGGATCATGTAACAATAAATGTGGTGGAGGTGTTCAAGAACGATTC
CGTTATTGTAATAATCCCGCCCCCGCCCATGGTGGTAGTGGTTGCCCTGG
ATACGCCAAAATGGTCAGAGCTTGCAATACACACAAGTGCCCAGGTA
Run BLAST on NCBI

transcript from alignment at sc0005268:106..4342-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044265 ID=TCONS_00044265|Name=TCONS_00044265|organism=Clytia hemisphaerica|type=transcript|length=4237bp|location=Sequence derived from alignment at sc0005268:106..4342- (Clytia hemisphaerica)
AGTCAACGGCGATTGGGGCAAATGGGGAGGATTCAATTCTTGTAACAAAC
GATGTGGAGGAGGTCTACAAACGAGATACAGATCATGTAATAACCCAACA
CCTGCACATGGTGGAAAATCATGTCCTGGTTCTCCCGCTCACTCACAATC
ATGCAACACTCATAAATGTCCAGGTATTGTCTCTGAACATTATTTAAAAA
ATCAGAAATTTCTATAAAGGTTCTTTTGAAAAGCCATCTATGAATGTGTT
TGAAAACTTTGATAGACACGCTTGTTTTTTTATAAGAACCAGTAAATTTT
CGCTGAGCCTGAGATTGTTCTTAAATTTATATTGTTCCAAACAATAGAGC
TATTGTTCTGAGGTCCTAAATCCGAGGTTTTTTCTCTTAAAAAATTGTTC
TTATAAATAAAAAAGCGTGTGAACATAGTCTCATACTGCATAAACGTTGG
TCTTATGGTAAAGTAGTGATAGGTATCTTCTTGCCATGTATTTTTCTTTA
AGGCGATAAAAAAGTTCACTCTACCCTTTCTCTTACACAGTCAATGGCAA
TTGGGGATCATGGGGTTCATATGGATCATGTAACAATAAATGTGGTGGAG
GTGTTCAAGAACGATTCCGTTATTGTAATAATCCCGCCCCCGCCCATGGT
GGTAAAGGATGTCCTGGATACGCCAAAATGGTCAGAGCTTGCAATACTCA
TAAATGCCCAGGTGAATATTTTTATCTGTCATGTTATGCCAGTAACTGAT
GAAAATTAGTGTGTTGGGTTTTGTAAATTCTAGTTCCAGGAACTATTGAA
ACTGATTTTTCCATCTTCAATCAATAGCACAAGCACTGACCTTTATAAAC
CCTAGACCAAGCTATATTCATCATNATCGATCAAGTTTGATTGTATTGTG
TAGCGCTATTTAAAGATTCATTCCTGAGTCACTTTTGAAGTAGAAAAGGT
TTGATCAATCATATTCCATGAATTACTGTTTTTATGTTTTCAGTAAACGG
TAATTGGGGCAAATGGGGAGGCTTCAATTCTTGCAACAAACGATGTGGAG
GAGGTCTACAAACAAGATACAGATCATGCAATAACCCAACACCTGCTCAT
GGTGGAAAATCATGTCCTGGTTCTCACGCTCACTCGNGATACAGATCATG
CAATAACCCAACACCTGCTCATGGTGGAAAATCATGTCCTGGTTCTCACG
CTCACTCGCAATCATGCAACACTCAAAAATGCCCAGGTATTTTTACGCTT
GTTTTTCACTTGTTTTTAAAGGGTTAGTTTAATCGGATGTTTGAAATCTA
GGACCAGTAGATTCCTCGTGCGGTCTAGAGGAAAAATTCCAAATATTCAA
CTTACAGCTTTTTTACTTACTTTTAACGAGATAGACATTTCTTTCTTATA
AGAAAGTCGTAAATTTTTGAAGCCTTTGGATGTTCTTAGAATGTTCTTAA
CATATTCTTATTTTCACTATTTTTTGAGTAATTTTTTCCATTTTCCTAGA
GGGTTTTAGTGTCCGCAAAGCCTTAAAATATTCTTAACTTATGTTCTTAA
TATTTTGGCCATCGAAGTTTTTTGTTCTTATATAGCTCTTGTGAAAAAAA
ATGTGTAAAAAGAGAATTTAAATTTGGTTTCAATTACCGTTTTGTGGAGA
TTTGCAATTTTATATCTTGAAATTAGCTAGGTAAAAAGATATGAAAACTT
TTATTCAGGCCATAGTAGATTATCTTAACCCTATTCAACCTAGGCTTTTA
GGGGCGGTTCAGAACTAGGGGGGGGGGCTTTTCCTGTACCACCCCTTAAC
TTTTGATCTAGTGGGTCTTTTTAGATGAAATTTGGCACACAAGATCCTTG
TCACGTAAGGTAACTTTTGACAAAAAAATTTTTTGATGACGTCACTCATC
ATGCCCAAAGTGAGCAAAAACCTGAAATTTCCTTTGTTCTTATAAATAAC
TATTGTATTCTAACAAAAGCTTTAGAAAAAATTTGCCTGAGTTTAAAATG
CTTATTTTATCCTAAATATTCAATAAATTACGGTTTAAACGATATATTTG
ACATTAAAAATAAATTTGTATTGGAAAAGTGTCAATTTTTGTGACACCTT
ACTGTCAGAAATGTCATCATGCTCAAGGTGTGAAAATCTATAGGTGTCAA
ATTTTTTCTTATTTTGAAGCTAAATAAAAGTTAGGAATTTACAGAAAATT
TCAAGGCAAAAGCTCTATTATTTCAGGACCTATTACCAATAGATTGACCT
CCGAACAGAAAGAGCCCCCCCCCCCTAGTACGAATAGGGTTATTACACGA
AAAACAGTCAATTCATGGGCCACAATTGGGGAACATCTGTATGGGAATGA
ACCGTAAATTTGAAGCTTTTTTCTAATTTTTTGTAAAATTTGGAAATTAC
TTAAGAATACTCAACCCTCAGCCAAAGTTTATTATTCTTATAAAAAAAGT
GTGTCGGTAAATTCTGCGAATTTTGAAACTTCTAAAAGGGACTCATTTTA
CCTAATTTGACCAATTTTCGATATTTCAAGAAGCAAAAAAGTCAAAATTT
TCTCATTTGTACAACCCTTGTTGGGCTGAGATATTTAATTTNAAAGTGTG
TCGGTAAATTCTGCGAATTTTGAAACTTCTAAAAGGGACTCATTTTACCT
AATTTGACCAATTTTCGATCTTTCAAGAAGCAAAAAAGTCAATATTTTCT
TATTTGTACAACCCTTGTTGGGCTGAAATATTTAATCTACTGATTTTTCA
AGCCCTTACAGGGGTTACAAGGTAAAAAAGAATTCTTTTGGGCGGCACAT
ACCCAATTCTCTCAAAAGTTTTAAACTGGGATCAAAAGACTGTTGGGACG
AGACTAGCCGGTACCAAACCCCCGCAGCGGNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
TATTTCTGTATTGGATGTGTTACTTTGTTCGAGTGTTACAAAGTTTGGAA
TCTTGAAGTAAGCTGTGAGTAGAAGCGAAAAGTTGATGGGGTCAGGTTGA
GTCTAATTATGTCCAACTTTAAGCTTCTTACTGATTGACTAATGATTCAC
TAATGACTTTATCAGTATTGAAAGGCCCTTGAGAACTACTTTTTCCTAAA
TACATGAAATCTAGTTACGACATTGCTTCAAGTTCTTTAGATGAATTACT
TTGAAATTTTGATAGTAATTTTTGATAATTGTTCTTTCCTTATCTACAAT
TTATACTTTTTAGTTAATGGAAAGTGGGGATCATGGGGCTCATATGGATC
ATGTAACAATAAATGTGGTGGAGGTGTTCAAGAACGATTCCGTTATTGTA
ATAATCCCGCCCCCGCCCATGGTGGTAGTGGTTGCCCTGGATACGCCAAA
ATGGTCAGAGCTTGCAATACACACAAGTGCCCAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027903XLOC_027903Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044265-exon-sc0005268-1575043694:4170..4342TCONS_00044265-exon-sc0005268-1575043694:4170..4342Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1575043694:3743..3802TCONS_00044265-exon-sc0005268-1575043694:3743..3802Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1575043694:106..219TCONS_00044265-exon-sc0005268-1575043694:106..219Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1510915933:4170..4342TCONS_00044265-exon-sc0005268-1510915933:4170..4342Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1510915933:3743..3802TCONS_00044265-exon-sc0005268-1510915933:3743..3802Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1510915933:106..219TCONS_00044265-exon-sc0005268-1510915933:106..219Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1491911889:4170..4342TCONS_00044265-exon-sc0005268-1491911889:4170..4342Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1491911889:3743..3802TCONS_00044265-exon-sc0005268-1491911889:3743..3802Clytia hemisphaericaexon
TCONS_00044265-exon-sc0005268-1491911889:106..219TCONS_00044265-exon-sc0005268-1491911889:106..219Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005268supercontigsc0005268:106..4342 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.288447	0	0.291084	0	0	2.32588	1.6601	0.988419	1.14042	0	1.16205	0.616889	12.2649	9.78858	0.6676	1.50418	3.23385	3.08015	64.1196	63.5219	8.92631	11.6654	2.71978	0	43.4188	43.9569	0.171293	0.810053	0.308466	0
Blast
[Close]
BLAST of TCONS_00044265 vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 4.155e-22
Identity = 53/113 (46.90%), Postives = 72/113 (63.72%), Query Frame = 2 
Query:    8 GDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCPG 346
            G+W  W G+ +C++ C GG   RYR+C+NP P++GG++C G  +  Q CNT  CPV+G+WGSW S+  C+  CGGG + R R C++P P  GG  CPG    V  CN   CPG
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQACPG 4870

HSP 2 Score: 92.0485 bits (227), Expect = 7.350e-22
Identity = 52/114 (45.61%), Postives = 67/114 (58.77%), Query Frame = 2 
Query:    2 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCP 343
            V+G W +W  +  C + CG G QTR R+CNNP+  HGG+ C G+      CN   CPV+G W +W  +G+C+  CG G Q R R CNNP PA GGS C G    ++ CN   CP
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCP 4698

HSP 3 Score: 83.9593 bits (206), Expect = 4.842e-19
Identity = 49/114 (42.98%), Postives = 67/114 (58.77%), Query Frame = 2 
Query:    2 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCP 343
            V+G W  W  + +C++ CG G QTR R CNNP PA GG  C G+    Q CN   CP++G W +W S+ +C+  CGGG ++R R C++P P +GG  C G       CN+  CP
Sbjct: 4642 VHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCP 4755

HSP 4 Score: 82.4185 bits (202), Expect = 1.247e-18
Identity = 49/114 (42.98%), Postives = 64/114 (56.14%), Query Frame = 2 
Query:    2 VNGDWGKWGGFNSCNKRCGGGLQTRYRSCNNPTPAHGGKSCPGSPAHSQSCNTHKCPVXXXXXXXXXXXXXXXKCGGGVQERFRYCNNPAPAHGGSGCPGYAKMVRACNTHKCP 343
            V+G + +W  + +C+  CG G+Q R R CN P PA+GGK C GS    ++C    CPV+G+W  W  +  C   CG G Q R R CNNP+  HGG  C G A  +  CN   CP
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCP 4641
The following BLAST results are available for this feature:
BLAST of TCONS_00044265 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN14.155e-2246.90Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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