TCONS_00044263 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044263
Unique NameTCONS_00044263
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length345

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044263 ID=TCONS_00044263|Name=TCONS_00044263|organism=Clytia hemisphaerica|type=transcript|length=345bp
GGAAGGTTTCCTCACTGGCTTGCATCTTCTGCTGTTCAGTGATGGGCAAT
GGATGTCGACTGTTGTAATCTGTCGGATTGGTGCTTCCCCTTTCATACTT
TACGGTCATACGGTACTGTTGTAACTTCAATCGGTGATTCTCGATGCGAG
CTGGAGCTTGTCTTCGTTGATTATTGTACAATGAGACCAGCGGCTCATGA
TCAGTTATTGTGTCGAATTTCATTCCGTGGAGATACATTCGGTTGGTCGT
GACGCCGAAAAGGATAGCTAAGCTTTCACCCTCGATCGGAGCATAGCGTT
GTTCTGTCTCTGTTAGCGATCTACTCGAGTAGTTGATTGTTTTGT
Run BLAST on NCBI

protein sequence of TCONS_00044263-protein

>TCONS_00044263-protein ID=TCONS_00044263-protein|Name=TCONS_00044263-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
KTINYSSRSLTETEQRYAPIEGESLAILFGVTTNRMYLHGMKFDTITDHE
PLVSLYNNQRRQAPARIENHRLKLQQYRMTVKYERGSTNPTDYNSRHPLP
ITEQQKMQASEETF
Run BLAST on NCBI

transcript from alignment at sc0005266:4355..4699

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044263 ID=TCONS_00044263|Name=TCONS_00044263|organism=Clytia hemisphaerica|type=transcript|length=345bp|location=Sequence derived from alignment at sc0005266:4355..4699 (Clytia hemisphaerica)
ACAAAACAATCAACTACTCGAGTAGATCGCTAACAGAGACAGAACAACGC
TATGCTCCGATCGAGGGTGAAAGCTTAGCTATCCTTTTCGGCGTCACGAC
CAACCGAATGTATCTCCACGGAATGAAATTCGACACAATAACTGATCATG
AGCCGCTGGTCTCATTGTACAATAATCAACGAAGACAAGCTCCAGCTCGC
ATCGAGAATCACCGATTGAAGTTACAACAGTACCGTATGACCGTAAAGTA
TGAAAGGGGAAGCACCAATCCGACAGATTACAACAGTCGACATCCATTGC
CCATCACTGAACAGCAGAAGATGCAAGCCAGTGAGGAAACCTTCC

Coding sequence (CDS) from alignment at sc0005266:4355..4699

>TCONS_00044263 ID=TCONS_00044263|Name=TCONS_00044263|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at sc0005266:4355..4699 (Clytia hemisphaerica)
AAAACAATCAACTACTCGAGTAGATCGCTAACAGAGACAGAACAACGCTA
TGCTCCGATCGAGGGTGAAAGCTTAGCTATCCTTTTCGGCGTCACGACCA
ACCGAATGTATCTCCACGGAATGAAATTCGACACAATAACTGATCATGAG
CCGCTGGTCTCATTGTACAATAATCAACGAAGACAAGCTCCAGCTCGCAT
CGAGAATCACCGATTGAAGTTACAACAGTACCGTATGACCGTAAAGTATG
AAAGGGGAAGCACCAATCCGACAGATTACAACAGTCGACATCCATTGCCC
ATCACTGAACAGCAGAAGATGCAAGCCAGTGAGGAAACCTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027901XLOC_027901Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044263-proteinTCONS_00044263-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044263-exon-sc0005266-1491911889:4355..4699TCONS_00044263-exon-sc0005266-1491911889:4355..4699Clytia hemisphaericaexon
TCONS_00044263-exon-sc0005266-1510915933:4355..4699TCONS_00044263-exon-sc0005266-1510915933:4355..4699Clytia hemisphaericaexon
TCONS_00044263-exon-sc0005266-1575043694:4355..4699TCONS_00044263-exon-sc0005266-1575043694:4355..4699Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005266supercontigsc0005266:4355..4699 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.12803	1.48581	1.92232	2.45973	0.657233	1.44779	0.529453	1.57539	1.45233	1.49227	0.976562	1.92552	1.86326	1.66615	1.07636	1.58848	1.18652	1.78919	0.679537	2.83045	2.25713	1.98942	0.0324497	0	3.02104	0.249964	3.15544	0.763489	2.08197	0.776526
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044263 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top