TCONS_00044259 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044259
Unique NameTCONS_00044259
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length351

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044259 ID=TCONS_00044259|Name=TCONS_00044259|organism=Clytia hemisphaerica|type=transcript|length=351bp
TGAAACTCTAAAAAGACTGATTTCATAAATAGTGGAATGATTAACCCAAT
CTTATTGAATTCATACTCTTGACATTCAATTAAATTGATTGGAAActtga
gaatatttttggtattttgaatgACATAGTACATATATATACAAGATGTT
GATTGACTATTTTAATATACCTATATGTGTTAATATCGATATTGGAATGA
AGAAATAATAATCATGGTAGTAAACACTCAACTAGAGGAAATCGTGATAT
TTTACGATGGACTTGAATGACATTTTTacatacaaacattttttaaactc
taTTTCACTAAAACTATATCTTTGATATAAAACTGTACttttgggtacct
a
Run BLAST on NCBI

transcript from alignment at sc0005259:1022..1498-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044259 ID=TCONS_00044259|Name=TCONS_00044259|organism=Clytia hemisphaerica|type=transcript|length=477bp|location=Sequence derived from alignment at sc0005259:1022..1498- (Clytia hemisphaerica)
TGAAACTCTAAAAAGACTGATTTCATAAATAGTGGAATGATTAACCCAAT
CTTATTGAATTCATACTCTTGACATTCAATTAAATTGATTGGAAACTTGA
GAATATTTTTGGTATTTTGAATGACATAGTACATATATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTTGAAT
GACATAGTACATATATACAAGATGTTGATTGACTATTTTAATATACCTAT
ATGTGTTAATATCGATATTGGAATGAAGAAATAATAATCATGGTAGTAAA
CACTCAACTAGAGGAAATCGTGATATTTTACGATGGACTTGAATGACATT
TTTACATACAAACATTTTTTAAACTCTATTTCACTAAAACTATATCTTTG
ATATAAAACTGTACTTTTGGGTACCTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027897XLOC_027897Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044259-exon-sc0005259-1575043694:1365..1498TCONS_00044259-exon-sc0005259-1575043694:1365..1498Clytia hemisphaericaexon
TCONS_00044259-exon-sc0005259-1575043694:1022..1238TCONS_00044259-exon-sc0005259-1575043694:1022..1238Clytia hemisphaericaexon
TCONS_00044259-exon-sc0005259-1510915933:1365..1498TCONS_00044259-exon-sc0005259-1510915933:1365..1498Clytia hemisphaericaexon
TCONS_00044259-exon-sc0005259-1510915933:1022..1238TCONS_00044259-exon-sc0005259-1510915933:1022..1238Clytia hemisphaericaexon
TCONS_00044259-exon-sc0005259-1491911889:1365..1498TCONS_00044259-exon-sc0005259-1491911889:1365..1498Clytia hemisphaericaexon
TCONS_00044259-exon-sc0005259-1491911889:1022..1238TCONS_00044259-exon-sc0005259-1491911889:1022..1238Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005259supercontigsc0005259:1022..1498 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.499686	0.325316	0.399925	0	0	0	0.316905	0	0.23723	1.14638	0	0.223705	0.801874	0.147603	0.655721	0.981185	0	2.24814	1.02385	2.33537	3.08032	0	0	1.74339	0	0	5.50854	3.41878	5.4972	1.98318
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044259 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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