TCONS_00044251 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044251
Unique NameTCONS_00044251
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1294

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044251 ID=TCONS_00044251|Name=TCONS_00044251|organism=Clytia hemisphaerica|type=transcript|length=1294bp
ACTGGTGATGGTGCTGATAACAATGATGATAGCAGTGCTTCCAAACTTTC
CTCATCATTATTGATAAATGCAAATCCTTCCAGCTCACAAGCAATCTCGC
CATTAAAAGATGCTGACTCTGCTCCAAATAAGAACCAGGATGATGAACAC
ACAGACTCTTCTACTGATAACGACACATACAACGACACAGAAAATGATGA
CTTATTAGTTGAGTATTCTGCTGATCAAATTGATAATGATAAAATGGTTT
TGTTTACCACTAATAAAGAGAACAATTCTTCAATAGAATGCATGACAAAG
GATACTGATTCAGCAGTGCACCCAGGGTGGCAAGAAGATTCATTTACTAC
CGATACCAAAGAATATTTAGAAGAGAATGACCCTGCCTTGGTTATAGATT
CAGATAGTAACGATGATGATCTACCCGATGAAGATGACCTCCAATTCGAT
TTCGATATTGATGATAAAGAAGATGATATGGAACAAAATGTGGACAGAAA
TGACTCTAATAATGAAGATAATTCTTTTACTCCTAAAATTGTGGAGACGT
CAGGCTGTGATGAAAATACTCCCATATTTGAAGGTTCCAGTTTGACCCNA
ATAATGAAGATAATTCTTTTACTCCTAAAATTGTGGAGACGTCAGGCTGT
GATGAAAATACTCCCATATTTGAAGGTTCCAGTTTGACCCTATCAGTCAG
TATAATGCTTATCATGACATTTGTAATGAGGCATCATATATCTGGAGTTG
CACTTATTGACTTGTTATCACTGATTGAAGTTCACATGGTTTCAAACAAT
ATATTTCAAACATCAATCAAATTTATTCGTAAAGCATTTACCAGAGCTCG
AGGTGCAATCACTTTACATTATTTTTGTCGCAAGTGTCTCACATATGTTG
GAAAAGAAGACATCGAGTGTAATGTTTGTATGGCTGGTACCAAAAATAAT
GGATATTTTGTGGTAATACCATTGTTGGAAAGTCTCCAGTCCTTGTTTTT
ATATGACGGTTTCATTGATAAACTGAAGTATCCAGttcaaagaaagaaga
aatgTGACGCTAACATAGAAGATATCATCGATGGACAGGTTTACAAAAAG
CATTTCTCGTCAGATGGATTCCTACATGGCACCACTAAAAAGCAGAAATC
GAATGAAATTCATATCTCCCTGCAAGTCAACACTGATGGTGTCAGTTTGT
TTAAAAGTTCTGTAATGCAAATTTGGCCGATTTATTATACCATTAATGAA
CTAGCTCCATCTTTCAGGTATCAGAGAAAATATCGTATTTTTGG
Run BLAST on NCBI

transcript from alignment at sc0005252:1..4518+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044251 ID=TCONS_00044251|Name=TCONS_00044251|organism=Clytia hemisphaerica|type=transcript|length=4518bp|location=Sequence derived from alignment at sc0005252:1..4518+ (Clytia hemisphaerica)
ACTGGTGATGGTGCTGATAACAATGATGATAGCAGTGCTTCCAAACTTTC
CTCATCATTATTGATAAATGCAAATCCTTCCAGCTCACAAGCAATCTCGC
CATTAAAAGATGCTGACTCTGCTCCAAATAAGAACCAGGATGATGAACAC
ACAGACTCTTCTACTGATAACGACACATACAACGACACAGAAAATGATGA
CTTATTAGTTGAGTATTCTGCTGATCAAATTGATAATGATAAAATGGTTT
TGTTTACCACTAATAAAGAGAACAATTCTTCAATAGAATGCATGACAAAG
GATACTGATTCAGCAGTGCACCCAGGGTGGCAAGAAGATTCATTTACTAC
CGATACCAAAGAATATTTAGAAGAGAATGACCCTGCCTTGGTTATAGATT
CAGATAGTAACGATGATGATCTACCCGATGAAGATGACCTCCAATTCGAT
TTCGATATTGATGATAAAGAAGATGATATGGAACAAAATGTGGACAGAAA
TGACTCTAATAATGAAGATAATTCTTTTACTCCTAAAATTGTGGAGACGT
CAGGCTGTGATGAAAATACTCCCATATTTGAAGGTTCCAGTTTGACCCNA
ATAATGAAGATAATTCTTTTACTCCTAAAATTGTGGAGACGTCAGGCTGT
GATGAAAATACTCCCATATTTGAAGGTTCCAGTTTGACCCTATCAGTCAG
TATAATGCTTATCATGACATTTGTAATGAGGTAAACATAACAAAGGCCAA
GAgcccaattgattgtttggtttgtGTCCTAGAAGCTTTAAAAAAATGGG
TCGGATGGTTGGTAGCCAAAATTGGAACCTTTTTTAAATtgtaagcgacc
gccaaatttagttttttcgtccatccgcctgaaaaacttttttggccatc
cgccaaattaaattcccgccaaaatttcttcctttaaggtaagcAGGGGa
gttggaaaaaaatgtcctgagtgaaaaattttcaaaaaattgattagcGG
ACTGGACGCTTACCTGAGAGTAGATTCCTTCCATAATCCTGATTgaatca
acaaatatttttgaaaattaaaaagaggTTTTTTAAGGTCTATGGAAAGG
GCCAATCAAAAATTACGTTCGTCCAAATTGCCCTATTTCTAGACCCCCTC
CCCTTTTGTACATTCCTTtttatatcaatatttttacccccccccccacc
taTCTCTTGGCTGACTTTGATATTCAAAGAATATGATTTTAGCATTATCC
TGTCATTTTATACACAATAACCTTAAGGGAtctaattttcgcggtaacta
attttcgcggagcTAATTTTtacgggaattaattttcacgtttttgtacc
gtaccgcgaaaattagttcccttaaaaaGGTAGTTTAGGGGATTAACAAT
TGTTTCTGGTTATTGATTCAGATAGACTTGACCCCCTCATCCGTTTGTTT
TGGTTCACTTTTTGCTGACCCCTCCCCCCTCAGTGatgaacgtacttttt
gaatggccccaAAGGAATCTCTGGGTTGAATTTGCCACATAAGGTATGGT
ATCAGTTAAAATTAATATACTTATTCTATAACTATAGGCATCATATATCT
GGAGTTGCACTTATTGACTTGTTATCACTGATTGAAGTTCACATGGTTTC
AAACAATATATTTCAAACATCAATCAAATTTATTCGTAAAGCATTTACCA
GAGCTCGAGGTGCAATCACTTTACATTATTTTTGTCGCAAGTGTCTCACA
TATGTTGGAAAAGAAGACATCGAGTGTAATGTTTGTATGGCTGGTACCAA
AAATAATGGATATTTTGTGGTAATACCATTGTTGGAAAGTCTCCAGTCCT
TGTTTTTATGTATGTTTCCCATTCatctaatttgatttttttatcactgc
tctaaattgttttgaaaagtgttCTGGTTGGATCCAATATTACAGtctta
aaatcaatttgaacaCGAAGCTTTATTTCTGCCAGTATTTATTGACGTAA
TTATTAAAAACACATGACAGCACAGCTCCTCTACCATTTGTACTCTAaat
atatggttgattacatttagttTTAGATTTGTAAGGGACaagcggggcga
taaatcctTAATAGCTCCGCTTTTTTGTAATTGCCCTgatgtaaataaaa
atttctattggttgaaaagtaTCGTGCGATATCTTTAgagcattttgatt
ggttaacaaaatatcgtagGAAATTTTTAAGCCACTCAAAATCagagtgt
cagtcgaatgtttttttatagttttcgACTGTTTCCGAATGTTTTTTATa
gttttggaatgtttttataagtttcgaaaagaatgGTGATcgagtgttct
tcaattcttttttttgaccatttaattaacgcggaataacaaGGTATTCT
TGAGTGATTTTGGCttaataacccctcgtttcattgaaaacacttcaaaa
tagccCTCACTAACACTACGTTCggtttattttgaaaagttttcaatgaa
cctcgggttATTAATCCtaaatcaccctctaaaccatgttattactactA
CAAATAGTATATAAAATTATGTCTACCTGTTTATCAATCCAACTACAATC
TACCTATCAATCTATCACTTCCAGATGACGGTTTCATTGATAAACTGAAG
TATCCAGttcaaagaaagaagaaatgTGACGCTAACATAGAAGATATCAT
CGATGGACAGGTacaattttgttttcatgtaaaaaaaCTATTGTTAAAAG
TTATATGCaatacaaattatttttagccTCAGCCCCCTTCCCCCTATTGT
TAACATCACTTGCAAGTATTTCCTCTGTACAAGTTGCTGCAAAAGCTCCC
TCATACACTTCAACCCATAGTGAGACCTAATGTGTATGGAAGGAGAGCAA
ATCTGAGTCAGTGTGGGGCTAAGTATTTCAGTTTCATTATTGACCTTTTG
ACTTCAATCTCTCAATGTATTATCATGAGTTTAAAatatagacactggat
aaacaacGTATATAAGGTATGAATCACTTAAAAACCCGCTTCCACACTAA
TGCTGGCTcttaaaaacaatattttttacaGGTTTAAAGTTTTAGTCAAA
GGATGTATCTCTTGATTGTCTCTGTTTCTGCTTCTTATGACTCGCCAGGT
TTACAAAAAGCATTTCTCGTCAGATGGATTCCTACATGGCACCACTAAAA
AGCAGAAATCGAATGAAATTCATATCTCCCTGCAAGTCAACACTGATGGT
GTCAGTTTGTTTAAAAGTTCTGTAATGCAAATTTGGCCGATTTATTATAC
CATTAATGAACTAGCTCCATCTTTCAGgtatttttcattatatttttaat
ATATAACGCATAGTCAACCTTTcttttgagaatttcaaaagttttgcttC
AATGACATTTTATTTGCCTTAAATAACAAAGGAAACTATTTGTTTAAGTT
TTAAAGGACCCCTTTCCTTGTTTTTGATCTTTATACAATGAAACTTAGTC
TAAAACCCCCAAAAATACATattcaaaaaacataaaacttactgctTGTT
CTTGTTGGGATACAGTTCTTAAGCCAGTACTGATTCTCAACTTCCTTTTC
TTACACTCATACTAACTTTCCTGTGCGAAATTGTTGACAACTTTGTGCGA
AGAAAGAGCTTTAAATGCTAATATTTTGGGAAGTTTTAGTTGcttttcat
atgattatgaAGTAATTGTCTTCTTATTATACATAAAGAGATGCAGTCCC
TTTAAGTACTTTCATttacatttttatgttttcagGTATCAGAGAAAATA
TCGTATTTTNATATCTCTTAATTGTCTCTGTTTCTGCTTCTTATGACTCG
CCAGGTTTACAAAAAGCATTTCTCGTCAGATGGATTCCTACATGGCACCA
CTAAAAAGCAGAAATCGAATGAAATTCATATCTCCCTGCAAGTCAACACT
GATGGTGTCAGTTTGTTTAAAAGTTCTGTAATGCAAATTTGGCCGATTTA
TTATACCATTAATGAACTAGCTCCATCTTTCAGgtatttttcattatatt
tttaatATATAACGCATAGTCAACCTTTcttttgagaatttcaaaagttt
tgcttCAATGACATTTCATTTGCCTTAAATAACAAAGGAAACTATTTGTT
TAAGTTTTAAAGGACCCCTTTCCTTGTTTTTGATCTTTATACAATGAAAC
TTAGTCTAAAACCCCCAAAAATACATattcaaaaaacataaaacttactg
ctTGTTCTTGTTGGGATACAGTTCTTAAGCCAGTACTGATTCTCAACTTC
CTTTTCTTACACTCATACTAACTTTCCTGTGCGAAATTGTTGACAACTTT
GTGCGAAGAAAGAGCTTTAAATGCTAATATTTTGGGAAGTTTTAGTTGct
tttcatatgattatgaAGTAATTGTCTTCTTATTATACATAAAGAGATGC
AGTCCCTTTAAGTACTTTCATttacatttttatgttttcagGTATCAGAG
AAAATATCGTATTTTTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027892XLOC_027892Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044251-exon-sc0005252-1491911889:1..730TCONS_00044251-exon-sc0005252-1491911889:1..730Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1510915933:1..730TCONS_00044251-exon-sc0005252-1510915933:1..730Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1575043694:1..730TCONS_00044251-exon-sc0005252-1575043694:1..730Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1491911889:1588..1859TCONS_00044251-exon-sc0005252-1491911889:1588..1859Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1510915933:1588..1859TCONS_00044251-exon-sc0005252-1510915933:1588..1859Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1575043694:1588..1859TCONS_00044251-exon-sc0005252-1575043694:1588..1859Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1491911889:2625..2710TCONS_00044251-exon-sc0005252-1491911889:2625..2710Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1510915933:2625..2710TCONS_00044251-exon-sc0005252-1510915933:2625..2710Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1575043694:2625..2710TCONS_00044251-exon-sc0005252-1575043694:2625..2710Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1491911889:3855..4033TCONS_00044251-exon-sc0005252-1491911889:3855..4033Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1510915933:3855..4033TCONS_00044251-exon-sc0005252-1510915933:3855..4033Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1575043694:3855..4033TCONS_00044251-exon-sc0005252-1575043694:3855..4033Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1491911889:4492..4518TCONS_00044251-exon-sc0005252-1491911889:4492..4518Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1510915933:4492..4518TCONS_00044251-exon-sc0005252-1510915933:4492..4518Clytia hemisphaericaexon
TCONS_00044251-exon-sc0005252-1575043694:4492..4518TCONS_00044251-exon-sc0005252-1575043694:4492..4518Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005252supercontigsc0005252:1..4518 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0797152	0.333205	0.144884	1.58744	0.302666	1.53315	1.47391	0.881737	0.989783	2.84899	1.77474	2.20626	1.78415	0.242546	0.199255	1.76568e-06	0	0.7647	1.08167	1.16974	0.560751	0.299931	0.228848	0.912777	1.59793	2.27579	0.687171	0.834731	0.905924
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044251 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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