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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044235 ID=TCONS_00044235|Name=TCONS_00044235|organism=Clytia hemisphaerica|type=transcript|length=297bp
GCAGTTACCAGACTCGTCTCCAAATGTGAACAAATTCGCCAAAAATCTTG
GAATGAAAATAAGGAGAACCCGGAACtccaaaaaagaaaaAGAAGTCGCC
AGGACGTTGGATATGTCGTTGGCAGAATATAAAAGGTCAAAACCAAAGAG
AGCGAAGCCAACGGAGGAAGAACCATTAATGCTAAACGTGTCCAACCCTC
TTGACGAGACATTGGACACTACAAACGAGGACGTCCAACTGATCGAAGAG
CCTACAGCCCCACATCAAGAGAAGTTACCCTCGCAAGACTATCCTCC Run BLAST on NCBI transcript from alignment at sc0005220:2058..4461- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044235 ID=TCONS_00044235|Name=TCONS_00044235|organism=Clytia hemisphaerica|type=transcript|length=2404bp|location=Sequence derived from alignment at sc0005220:2058..4461- (Clytia hemisphaerica)
GCAGTTACCAGACTCGTCTCCAAATGTGAACAAATTCGCCAAAAATCTTG
GAATGAAAATAAGGAGAACCCGGAACTCCAAAAAAGAAAAGTGAGAATCG
TTTTTTCCTAATTAACTTTCTACTTTCTAATCCTTTCTATATTCGATTTT
ATACAGTTTAACCTTAATGCTGCGCCAAGTAATAGTCATGTGGAATTAGG
TCACAAACCGCCAAAACCGGGACAAAAATGGTGCAGAGATGAAATTTTGC
ATATAACACCCCTGTCTCTATTGTTTCCAGCTAAAGAATTCTAGTGGGGA
TGGTTTTGAAGTGCGATTTTGTTCATTCAACTTCCAATGGGGACAAAATC
ATAGATCGATTTCCCAGTTGGGATGGAATTTTAGGGATTTTTTTCCACTG
GGGCGATTTTTTGGCCAATTTTTCCAGTGGGGTGGGGGGTCAACCGGGTC
TGTGACACAGGGGTGTCATATAGGTCCAGGAACATCTCAGGAATCGCTAA
AAAAAAAGCACCACCCTCAGGAAGATGGGAACACCCTGAAATGGCGGACA
TAGTACTTTTTTCTACAATTAATCAAGTGGGATTCTTGATAACTGATTTT
TATGGTTCTTAAATGTGAAAAATAACTAGACAGGGAGATTCCTCTAGATG
AGTAGATAAGAAAAATGGGGTCACTTTTGAAATTTGAACCACTTCGTCCC
GAGATATGACCTCTAANCCAAAAATCTTGGAATGAAAATAAGGAGAACCC
GGAACTCCAAAAAAGAAAAGTGAGAATCGTTTTTTCCTAATTAACTTTCT
ACTTTCTAATCCTTTCTATATTCGATTTTATACAGTTTAACCTTAATGCT
GCGCCAAGTAATAGTCATGTGGAATTAGGTCATAAACCGCCAAAACCGGG
ACAAAAATGGTGCAGAGATGAAATTTTGCATATAACACCCCTGTCTCTAT
TGTTTCCAGCTAAAGAATTCTAGTGGGGATGGTTTTGAAGTGCGATTTTG
TTCATTCAACTTCCAATGGGGACAAAATCATAGATCGATTTCCCAGTTGG
GATGGAATTTTAGGGATTTTTTTCCACTGGGGCGATTTTTTGGCCAATTT
TTCCAGTGGGGTGGGGGGTCAACCGGGTCTGTGACACAGGGGTGTCATAT
AGGTCCAGGAACATCTCAGGAATCGCTAAAAAAAAAGCACCACCCTCAGG
AAGATGGGAACACCCTGAAATGGCGGACATAGTACTTTTTTCTACAATTA
ATCAAGTGGGATTCTTGATAACTGATTTTTTATGGTTCTTAAATGTGAAA
AATAATAGTCCAAAAATGACGATTTTGATGACGTCAGCATTCTTACTGAG
AGGAATGAATCGGAACGTAGACCAACTCATCGTGTAGCCCTGATCATGGG
CTGTCAGAAAAATATATGGTTTAATATGTTTAGATCAGCCGTTCGCAAGA
TACAGGCTCAGATAAATTCGTTTTAACGCTTATTTTTGCTGAGTCAACAT
TTTTTTCGATTTTAAAATCGTTATATCTCGCCACCGGTTGGTTAAGATCC
CAAGATACTAAACCATATATTTTTTTTGAAAGCTTGTGATCCGGGCTACG
CGATGAGTTGGTCGAAGTTCCGATTTAACGTTCTCAGTAAAAATGCTGAG
GTCATAAAAATTGTCATTTTTGGACTTTAGAGGTCATATCTCGGGACCAC
GTGGCTCAAATTTCAAAAGTGACCCCTTTTTTCTTATCTACTCATCTAGA
GGAATCTCTCTGTCTAGTTATTTTTGACATTTAAGAACCATAAAAAATCA
GTTATCAAGGATCCCCCTTGATTAATTGTAGGGAAAAGTACTATGTCCGC
CATTATGAATTTCAGGGTGTACCCATCTTCCTGGGGCTGCCTGGGGTGGG
GCTTTTTTTTGGTGATTCCTGGTCTGTTCCTGGATGTATGTGCAAAATTT
CATCTCTAAACTATTTTTTTCTGAGTAGTTATGCAATTCGACCTGACTAT
AAAGGCCATTTGGTTTACATTTTTACAAAATATATTTTAAAAGTGAAGAC
ATTTTCGGGCCCGAACTGGCCAGTACTAGATTTGACCATGTTCCAGTTCT
CTATGATATGTTTAGAGGAAGAAAGCATTTTTGTACGTATGATCTTATGT
AACTTATTTCGATCTTTTTACTTTGACTTTTCTGCTCATTTTTTCAGAGA
AGTCGCCAGGACGTTGGATATGTCGTTGGCAGAATATAAAAGGTCAAAAC
CAAAGAGAGCGAAGCCAACGGAGGAAGAACCATTAATGCTAAACGTGTCC
AACCCTCTTGACGAGACATTGGACACTACAAACGAGGACGTCCAACTGAT
CGAAGAGCCTACAGCCCCACATCAAGAGAAGTTACCCTCGCAAGACTATC
CTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044235-exon-sc0005220-1575043694:4372..4461 | TCONS_00044235-exon-sc0005220-1575043694:4372..4461 | Clytia hemisphaerica | exon |
| TCONS_00044235-exon-sc0005220-1575043694:2058..2264 | TCONS_00044235-exon-sc0005220-1575043694:2058..2264 | Clytia hemisphaerica | exon |
| TCONS_00044235-exon-sc0005220-1510915933:4372..4461 | TCONS_00044235-exon-sc0005220-1510915933:4372..4461 | Clytia hemisphaerica | exon |
| TCONS_00044235-exon-sc0005220-1510915933:2058..2264 | TCONS_00044235-exon-sc0005220-1510915933:2058..2264 | Clytia hemisphaerica | exon |
| TCONS_00044235-exon-sc0005220-1491911889:4372..4461 | TCONS_00044235-exon-sc0005220-1491911889:4372..4461 | Clytia hemisphaerica | exon |
| TCONS_00044235-exon-sc0005220-1491911889:2058..2264 | TCONS_00044235-exon-sc0005220-1491911889:2058..2264 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005220 | supercontig | sc0005220:2058..4461 - |
Blast
The following BLAST results are available for this feature:
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