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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044225 ID=TCONS_00044225|Name=TCONS_00044225|organism=Clytia hemisphaerica|type=transcript|length=1013bp
taCCTTCTAAAAGTCTCATattaattcgaacgaaaagcGAGTTATTTTGT
TACCAAATGGAAAAGGGCTGTATGAAAGTCTGTGAACCTTACCCTGTAGG
TATAGGTGTCTTCTGAAATTGCCGATTTTTATCataatatttttatagaa
actattcttataaaaaaagcgtgtataatattcgttaaattctaattatt
tttttgaaatttcgtccTTTCCTTCCTGATTTTTTCCGTCATTTTGTAAT
CCCcatattttttcaacatttcacTGCATTTCTTTTCACACATCATCCCA
ATGTCTGCTCTTCGTATCACAACAGTGGTTTGAATCCAGTCTTTGAAGAT
CTTATTTATCTCGTTGTTCTCAGAGATAGTAAAATCTGCTCTGCCTGTTG
TTTTACCACCTCTTTTCCGATCTTCAAAATCACTGTCTTCATCCGATTCA
ACACTGTCTTCGTCCGATCCAACACTGTCCTCTGTCTCACTGCTCAAATC
ACTGATCTCATCATTCTTTTCCGacatttttccaacattcttTTCCGGTA
TTTTCTCATCTTTCTCTTTCCGCACTTTTTCGACATTCTTTTCCAACATT
TTCCCATCTTTCTCTTCCGGCACTTTTTCGACATCTTCTTTAGCATTATT
TTCAGAGGAGGAAGGTTTTGATCTCATTAAAGCGTgcaacatttttgaag
ttttgcttgcgtttttattcttttcttgCAAATAGTACGATTTGGCAGCA
GTTTTTTCTGAGTGGCACATTAACATGGCCACGTCTTTTTTTAAGTCAGG
TCGTTCTTCATAGGTCTTAGTAACGGCGAATTTTCTGACCTTTGTTGTAC
TGAATGTTGGTTTATTGGCAGTCAAACCGACGCATTTGGACCAATACGAT
TTGATCTGCCCTGTCACCATTGAACTGCTCATCTTGTTGCCACTCCATGA
GACGAAGACGGGACTGGTCTTTGATCGGTTTATCCCCTCAAGTTTGTTGC
GAAAATacctgaa Run BLAST on NCBI protein sequence of TCONS_00044225-protein >TCONS_00044225-protein ID=TCONS_00044225-protein|Name=TCONS_00044225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=273bp
FRYFRNKLEGINRSKTSPVFVSWSGNKMSSSMVTGQIKSYWSKCVGLTAN
KPTFSTTKVRKFAVTKTYEERPDLKKDVAMLMCHSEKTAAKSYYLQEKNK
NASKTSKMLHALMRSKPSSSENNAKEDVEKVPEEKDGKMLEKNVEKVRKE
KDEKIPEKNVGKMSEKNDEISDLSSETEDSVGSDEDSVESDEDSDFEDRK
RGGKTTGRADFTISENNEINKIFKDWIQTTVVIRRADIGMMCEKKCSEML
KKYGDYKMTEKIRKERTKFQKNN Run BLAST on NCBI transcript from alignment at sc0005199:3233..4245 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044225 ID=TCONS_00044225|Name=TCONS_00044225|organism=Clytia hemisphaerica|type=transcript|length=1013bp|location=Sequence derived from alignment at sc0005199:3233..4245 (Clytia hemisphaerica)
ttcaggtATTTTCGCAACAAACTTGAGGGGATAAACCGATCAAAGACCAG
TCCCGTCTTCGTCTCATGGAGTGGCAACAAGATGAGCAGTTCAATGGTGA
CAGGGCAGATCAAATCGTATTGGTCCAAATGCGTCGGTTTGACTGCCAAT
AAACCAACATTCAGTACAACAAAGGTCAGAAAATTCGCCGTTACTAAGAC
CTATGAAGAACGACCTGACTTAAAAAAAGACGTGGCCATGTTAATGTGCC
ACTCAGAAAAAACTGCTGCCAAATCGTACTATTTGcaagaaaagaataaa
aacgcaagcaaaacttcaaaaatgttgcACGCTTTAATGAGATCAAAACC
TTCCTCCTCTGAAAATAATGCTAAAGAAGATGTCGAAAAAGTGCCGGAAG
AGAAAGATGGGAAAATGTTGGAAAAGAATGTCGAAAAAGTGCGGAAAGAG
AAAGATGAGAAAATACCGGAAaagaatgttggaaaaatgtCGGAAAAGAA
TGATGAGATCAGTGATTTGAGCAGTGAGACAGAGGACAGTGTTGGATCGG
ACGAAGACAGTGTTGAATCGGATGAAGACAGTGATTTTGAAGATCGGAAA
AGAGGTGGTAAAACAACAGGCAGAGCAGATTTTACTATCTCTGAGAACAA
CGAGATAAATAAGATCTTCAAAGACTGGATTCAAACCACTGTTGTGATAC
GAAGAGCAGACATTGGGATGATGTGTGAAAAGAAATGCAgtgaaatgttg
aaaaaatatgGGGATTACAAAATGACGGAAAAAATCAGGAAGGAAAggac
gaaatttcaaaaaaataattagaatttaacgaatattatacacgcttttt
ttataagaatagtttctataaaaatattatGATAAAAATCGGCAATTTCA
GAAGACACCTATACCTACAGGGTAAGGTTCACAGACTTTCATACAGCCCT
TTTCCATTTGGTAACAAAATAACTCgcttttcgttcgaattaatATGAGA
CTTTTAGAAGGta Coding sequence (CDS) from alignment at sc0005199:3233..4245 >TCONS_00044225 ID=TCONS_00044225|Name=TCONS_00044225|organism=Clytia hemisphaerica|type=CDS|length=822bp|location=Sequence derived from alignment at sc0005199:3233..4245 (Clytia hemisphaerica)
ttcaggtATTTTCGCAACAAACTTGAGGGGATAAACCGATCAAAGACCAG
TCCCGTCTTCGTCTCATGGAGTGGCAACAAGATGAGCAGTTCAATGGTGA
CAGGGCAGATCAAATCGTATTGGTCCAAATGCGTCGGTTTGACTGCCAAT
AAACCAACATTCAGTACAACAAAGGTCAGAAAATTCGCCGTTACTAAGAC
CTATGAAGAACGACCTGACTTAAAAAAAGACGTGGCCATGTTAATGTGCC
ACTCAGAAAAAACTGCTGCCAAATCGTACTATTTGcaagaaaagaataaa
aacgcaagcaaaacttcaaaaatgttgcACGCTTTAATGAGATCAAAACC
TTCCTCCTCTGAAAATAATGCTAAAGAAGATGTCGAAAAAGTGCCGGAAG
AGAAAGATGGGAAAATGTTGGAAAAGAATGTCGAAAAAGTGCGGAAAGAG
AAAGATGAGAAAATACCGGAAaagaatgttggaaaaatgtCGGAAAAGAA
TGATGAGATCAGTGATTTGAGCAGTGAGACAGAGGACAGTGTTGGATCGG
ACGAAGACAGTGTTGAATCGGATGAAGACAGTGATTTTGAAGATCGGAAA
AGAGGTGGTAAAACAACAGGCAGAGCAGATTTTACTATCTCTGAGAACAA
CGAGATAAATAAGATCTTCAAAGACTGGATTCAAACCACTGTTGTGATAC
GAAGAGCAGACATTGGGATGATGTGTGAAAAGAAATGCAgtgaaatgttg
aaaaaatatgGGGATTACAAAATGACGGAAAAAATCAGGAAGGAAAggac
gaaatttcaaaaaaataattag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044225-exon-sc0005199-1491911889:3233..4245 | TCONS_00044225-exon-sc0005199-1491911889:3233..4245 | Clytia hemisphaerica | exon |
| TCONS_00044225-exon-sc0005199-1510915933:3233..4245 | TCONS_00044225-exon-sc0005199-1510915933:3233..4245 | Clytia hemisphaerica | exon |
| TCONS_00044225-exon-sc0005199-1575043694:3233..4245 | TCONS_00044225-exon-sc0005199-1575043694:3233..4245 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005199 | supercontig | sc0005199:3233..4245 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013762 | Integrase-like_cat |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006310 | DNA recombination |
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006310 |
DNA recombination |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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