TCONS_00044220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044220
Unique NameTCONS_00044220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3192

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044220 ID=TCONS_00044220|Name=TCONS_00044220|organism=Clytia hemisphaerica|type=transcript|length=3192bp
CGAATTTGAAAGGAAAATCTAAAACTTACTGGCCCCttactgtacttaaa
atgtaaatattCCCAGACACAGTTTGAGCTGAAAATGAAACGTTAACATT
TTAAGCTTATTTTTCTATTAGAGCTCTTATGGGCGGACGAAGACATTTTC
AGGAAGCGAGACCAGGAGAGAAAAGGTTCAGACATGGAGCTCATCAGTGA
AGACTTGGAAATCTTTCAAGAAGATGTCCATCAgttctgtcaaaatttca
atcaaatgaGAATCAAATTTGACAGCAAACATAAAAACTGTAAATATTTC
GTGAATGAGTTACTTATTGCATTCTCATTACCTCCAAAATACACTTTCAC
AAAAGTCAAAAAAGAATCATGGTGGGGAAGTGTTTCAAGATCATCATCAA
GTTGCAGCTCGTGGAAAAACACCAATGATGTCCTCAAATTATTTCTACGT
GGCATTGAAGCTGAAACAAAATGGCTGCAAGATTTATTCATTGGAATGAA
ATTTGATCAACATCAAGTTGAAAGATTGGTCATAAAGTTGAAAGAAGAAA
TTGGAGGTAACATAAAATCTAATGGTTTCACCTTGAGCACTTTATTCATC
ACACTTACTGAAGTTCTCTTGAGTGAAATTGACCAGAACTTTTGGGAGAT
GTTCAATTTAGATGAAAATACAAGAAAAACGTTCGCATTCATTGTGCCAA
AGTTGCTGGCTGCCACATTAGCTGCTGACCGATATATTGCTCTGTTTTGG
CTTGTCATTGGTTTATTGTTATTGATATTTAAAAAGATCTCGGAACGTTA
CAATTTACATGATTTATTTGGCGGAGAAGCAGATTATGAACGATTCTTCC
AACTTTGTGAAAAAGTCTTGTTACCGTTGACACAAAGCTTATATCAACAT
TGGATGAATTCGAATTAATCTAATTATTGTATTTCCTTTTTGAGTTTTGG
TCCTGGAAATTCCGAAAGGTATTGTCAAAAATCCTGGGTTTTTGTGTTTT
GCAACAGAATCAACGAAATGctgcttaaaagaaaaaaacataatataCAA
TAGTCACCAGAACTGTTAACAAATAAGCAGCTTTTTCGTTACAGCTACTT
GATGGTTTCATTTCCTCGATTTTGAATCTGATAATATGAGACGTTATCGT
ATGCATATTGCCATAATATGTCTTTACGTAAAAGACAAGGTCATCAGTTT
GATCAAGCTTGTACGCATATTTAGCTAGGATGCAACTCGGTTTTTTGATC
TCCCCATTTAAAACTTGATAAAAGTTAAAAGCGAACGAGATGTTTTTAAA
TCCATTAACGTACACGTTGATCGTACAGTTTAAGTAAATAGGAAGTCTAA
GATTTAATTTATATACAATCCCCGGTTTTGCTTCTTTTTTGTATACCAAT
TCCTGTGGAAGTGATATGAAGTGATATGGGTCACGATCGCCTATCCCGCC
TGTCAAGGTTCGTGTTTGAAATCCAGCTGTGTAGATGGTCAGTTGTAATG
GTTTGTCTACCTGTGTGATAGGATCAATCTTGGTGAAGTTGCATGCCGGA
CTCAATGTCGGTAGGATAAGGAAGATGGTACTCAGTAACGGTCGAGGATA
CATCTTGCAATTTGTACTATTTCCAGATTACAGAAGATGCTTTGTAGACT
TTTTGATTGTTATTGTCGCTATAAGATTTCTAGTGGTTGTTTTTACAGCA
ATAGTTGTTTATTCACTCTTGTCATTTTACTCACTctaaaattataaaga
aaaatatttatgatgatTTCTAGTATTTTCGTTTTGGATTAAGAATTGAA
CATTCACCGAAGTTTTATTACATTATGAATCAGTCCTTTGCAGTAAATTT
CATACAAATTTTCATGCATCTTTATTGAATTGATAAAGTTCCCCATTTGC
CAAATTAtctttcatttcatcatttcaCAGCACAGATCGACTAAACAAGC
AACATCAAAAAGGTTTATNctttcatttcatcatttcaCAGCACAGATCG
ACTAAACAAGCAACATCAAAAAGGTTTATTCTCGCTAAAAATCATATCGC
TTAGTTACATATTTTGTCGTTTTGGAAGAGATTTATCCATGGTCGAATTT
CCTTTTGGTCTGGGCTAAATGCNTTCTCGCTAAAAATCATATCGCTTAGT
TACATATTTTGTCGTTTTGGAAGAGATTTATCCATGGTCGAATTTCCTTT
TGGTCTGGGCTAAATTTTCGGgacattcttttttctttgtggCGATACAG
CCTTTCTTGACCACCATCAGAATCCTAAAAAGCAAACTAAGGGACTAGGT
TCGAGTTTGCTTGAATCAAGTCAGAATCATATAAAGATATTGTACACGCC
AAAATATCCCAAACTATCACTAGAACGAAACCAAAATCATGTCCAGGCAT
TTGTTGTTGTCTTTTTCATTCTGTAGACTAAGgcaagaccaatttaattt
gttgttctacgggcgcgACCGACCCAGCATTTGctgcaaacgaaaaaata
ataatattaaatTTTCCTATGCCACAAATTTCTAATactagtcatttaaa
aaatttacacttaaaaaaagttgagtcgaatctagaatcatgaatctatg
cacgaaagattttattacaaactccatcaaaaatgaatgatgaatttcta
accaagattatttgaaaatattacttaagCCTAATTTCcttcgaccgacc
gactcatattTTGTCATcaatctgcccgtagaacaacaaatgcACAAATt
taattggtctcgcctaatgtGACCTAAATATTATGGTATCTTAATTCCGT
TTTAAGACAAACCAAAAGACATAAGTATGGCCGAAAATGATTTTCCAATT
CCTCTTTTCACACCATGGATCGACATACTAAAACCAGTATCTTTCGAGCT
AACGGAAGCAACCGAAAGAATCGATGTTTTTGTTCAATTCCAAATGagaa
aataaccaaaaagtTATATTCAATAGTCATCATATCTGACAAtacacaac
aaacaacaacatcaTGATTGAAATATGAttagttctatttatactgaaac
gattaatttgtctgagacgagcaatttagaaaattacATTTTGGAGGGGC
ccaataattaattagttccatccttctaaaaccactctcttagggtcctt
gcaagcttctgtttggtgccattttatatccattcacaccat
Run BLAST on NCBI

protein sequence of TCONS_00044220-protein

>TCONS_00044220-protein ID=TCONS_00044220-protein|Name=TCONS_00044220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=244bp
MELISEDLEIFQEDVHQFCQNFNQMRIKFDSKHKNCKYFVNELLIAFSLP
PKYTFTKVKKESWWGSVSRSSSSCSSWKNTNDVLKLFLRGIEAETKWLQD
LFIGMKFDQHQVERLVIKLKEEIGGNIKSNGFTLSTLFITLTEVLLSEID
QNFWEMFNLDENTRKTFAFIVPKLLAATLAADRYIALFWLVIGLLLLIFK
KISERYNLHDLFGGEADYERFFQLCEKVLLPLTQSLYQHWMNSN
Run BLAST on NCBI

transcript from alignment at sc0005188:1..3792-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044220 ID=TCONS_00044220|Name=TCONS_00044220|organism=Clytia hemisphaerica|type=transcript|length=3792bp|location=Sequence derived from alignment at sc0005188:1..3792- (Clytia hemisphaerica)
CGAATTTGAAAGGAAAATCTAAAACTTACTGGCCCCTTACTGTACTTAAA
ATGTAAATATTCCCAGACACAGTTTGAGCTGAAAATGAAACGTTAACATT
TTAAGCTTATTTTTCTATTAGAGCTCTTATGGGCGGACGAAGACATTTTC
AGGAAGCGAGACCAGGAGAGAAAAGGTTCAGACATGGAGCTCATCAGTGA
AGACTTGGAAATCTTTCAAGAAGATGTCCATCAGTTCTGTCAAAATTTCA
ATCAAATGAGAATCAAATTTGACAGCAAACATAAAAACTGTAAATATTTC
GTGAATGAGTTACTTATTGCATTCTCATTACCTCCAAAATACACTTTCAC
AAAAGTCAAAAAAGAATCATGGTGGGGAAGTGTTTCAAGATCATCATCAA
GTTGCAGCTCGTGGAAAAACACCAATGATGTCCTCAAATTATTTCTACGT
GGCATTGAAGCTGAAACAAAATGGCTGCAAGATTTATTCATTGGAATGAA
ATTTGATCAACATCAAGTTGAAAGATTGGTCATAAAGTTGAAAGAAGAAA
TTGGAGGTAACATAAAATCTAATGGTTTCACCTTGAGCACTTTATTCATC
ACACTTACTGAAGTTCTCTTGAGTGAAATTGACCAGAACTTTTGGGAGAT
GTTCAATTTAGATGAAAATACAAGAAAAACGTTCGCATTCATTGTGCCAA
AGTTGCTGGCTGCCACATTAGCTGCTGACCGATATATTGCTCTGTTTTGG
CTTGTCATTGGTTTATTGTTATTGATATTTAAAAAGGTAGATAATCATTT
AAACTTTATGCTTTATCTTCGTAAAAACCATGGTAAAGGGGGCATTAAAA
TGTCTAAATGGCTCAAACTTAATTTTTTTTCTTCTTCCTAAAGGTTTTGA
AAATAGCCGAAGAAGAATGGCCCTCCGTTTGAACCTTTTCTACTTATCCA
TAAAAGATTCATACTAGCAGTAGATTTTCTGTCTTAAGTAGATTAATTCT
TGCTGGGAAATGAAATTCCCCACATCATATCTCCACAAAAAATCATAAAA
AGTGGCCATTTGCCAAATCAAATGAGACCAGTACCCAATCGTTTTGGTTT
GTTAAGATTTCCAGCTTAGTAACGAAAGTAAAAGAGAATCATTATCCTCG
TATTTTAATACAATTTTGCTAAATTAAACAACACAAACCAAAAAAAATGT
TTCAGTGCTTCTAATTTCCCACTCCCCAAAATAAATCCCCACCAAAAACC
GCTATTTAGCAAATCTCCAAAGTAAATCCATGCAAAAATAATCCACTTAA
GGTATTTTTATACTACTCCGTTCCTCACGAGTATGTGATGATATCGTGGC
TTGTAATTAAAACGACATACTTTGTTTTCATCATAGATCTCGGAACGTTA
CAATTTACATGATTTATTTGGCGGAGAAGCAGATTATGAACGATTCTTCC
AACTTTGTGAAAAAGTCTTGTTACCGTTGACACAAAGCTTATATCAACAT
TGGATGAATTCGAATTAATCTAATTATTGTATTTCCTTTTTGAGTTTTGG
TCCTGGAAATTCCGAAAGGTATTGTCAAAAATCCTGGGTTTTTGTGTTTT
GCAACAGAATCAACGAAATGCTGCTTAAAAGAAAAAAACATAATATACAA
TAGTCACCAGAACTGTTAACAAATAAGCAGCTTTTTCGTTACAGCTACTT
GATGGTTTCATTTCCTCGATTTTGAATCTGATAATATGAGACGTTATCGT
ATGCATATTGCCATAATATGTCTTTACGTAAAAGACAAGGTCATCAGTTT
GATCAAGCTTGTACGCATATTTAGCTAGGATGCAACTCGGTTTTTTGATC
TCCCCATTTAAAACTTGATAAAAGTTAAAAGCGAACGAGATGTTTTTAAA
TCCATTAACGTACACGTTGATCGTACAGTTTAAGTAAATAGGAAGTCTAA
GATTTAATTTATATACAATCCCCGGTTTTGCTTCTTTTTTGTATACCAAT
TCCTGTGGAAGTGATATGAAGTGATATGGGTCACGATCGCCTATCCCGCC
TGTCAAGGTTCGTGTTTGAAATCCAGCTGTGTAGATGGTCAGTTGTAATG
GTTTGTCTACCTGTGTGATAGGATCAATCTTGGTGAAGTTGCATGCCGGA
CTCAATGTCGGTAGGATAAGGAAGATGGTACTCAGTAACGGTCGAGGATA
CATCTTGCAATTTGTACTATTTCCAGATTACAGAAGATGCTTTGTAGACT
TTTTGATTGTTATTGTCGCTATAAGATTTCTAGTGGTTGTTTTTACAGCA
ATAGTTGTTTATTCACTCTTGTCATTTTACTCACTCTAAAATTATAAAGA
AAAATATTTATGATGATTTCTAGTATTTTCGTTTTGGATTAAGAATTGAA
CATTCACCGAAGTTTTATTACATTATGAATCAGTCCTTTGCAGTAAATTT
CATACAAATTTTCATGCATCTTTATTGAATTGATAAAGTTCCCCATTTGC
CAAATTATCTTTCATTTCATCATTTCACAGCACAGATCGACTAAACAAGC
AACATCAAAAAGGTTTATNCTTTCATTTCATCATTTCACAGCACAGATCG
ACTAAACAAGCAACATCAAAAAGGTTTATTCTCGCTAAAAATCATATCGC
TTAGTTACATATTTTGTCGTTTTGGAAGAGATTTATCCATGGTCGAATTT
CCTTTTGGTCTGGGCTAAATGCNTTCTCGCTAAAAATCATATCGCTTAGT
TACATATTTTGTCGTTTTGGAAGAGATTTATCCATGGTCGAATTTCCTTT
TGGTCTGGGCTAAATTTTCGGGACATTCTTTTTTCTTTGTGGCGATACAG
CCTTTCTTGACCACCATCAGAATCCTAAAAAGCAAACTAAGGGACTAGGT
TCGAGTTTGCTTGAATCAAGTCAGAATCATATAAAGATATTGTACACGCC
AAAATATCCCAAACTATCACTAGAACGAAACCAAAATCATGTCCAGGCAT
TTGTTGTTGTCTTTTTCATTCTGTAGACTAAGGCAAGACCAATTTAATTT
GTTGTTCTACGGGCGCGACCGACCCAGCATTTGCTGCAAACGAAAAAATA
ATAATATTAAATTTTCCTATGCCACAAATTTCTAATACTAGTCATTTAAA
AAATTTACACTTAAAAAAAGTTGAGTCGAATCTAGAATCATGAATCTATG
CACGAAAGATTTTATTACAAACTCCATCAAAAATGAATGATGAATTTCTA
ACCAAGATTATTTGAAAATATTACTTAAGCCTAATTTCCTTCGACCGACC
GACTCATATTTTGTCATCAATCTGCCCGTAGAACAACAAATGCACAAATT
TAATTGGTCTCGCCTAATGTGACCTAAATATTATGGTATCTTAATTCCGT
TTTAAGACAAACCAAAAGACATAAGTATGGCCGAAAATGATTTTCCAATT
CCTCTTTTCACACCATGGATCGACATACTAAAACCAGTATCTTTCGAGCT
AACGGAAGCAACCGAAAGAATCGATGTTTTTGTTCAATTCCAAATGAGAA
AATAACCAAAAAGTTATATTCAATAGTCATCATATCTGACAATACACAAC
AAACAACAACATCATGATTGAAATATGATTAGTTCTATTTATACTGAAAC
GATTAATTTGTCTGAGACGAGCAATTTAGAAAATTACATTTTGGAGGGGC
CCAATAATTAATTAGTTCCATCCTTCTAAAACCACTCTCTTAGGGTCCTT
GCAAGCTTCTGTTTGGTGCCATTTTATATCCATTCACACCAT

Coding sequence (CDS) from alignment at sc0005188:1..3792-

>TCONS_00044220 ID=TCONS_00044220|Name=TCONS_00044220|organism=Clytia hemisphaerica|type=CDS|length=1470bp|location=Sequence derived from alignment at sc0005188:1..3792- (Clytia hemisphaerica)
ATCTCGGAACGTTACAATTTACATGATTTATTTGGCGGAGAAGCAGATTA
TGAACGATTCTTCCAACTTTGTGAAAAAGTCTTGTTACCGTTGACACAAA
GCTTATATCAACATTGGATGAATTCGAATTAAATGGAGCTCATCAGTGAA
GACTTGGAAATCTTTCAAGAAGATGTCCATCAGTTCTGTCAAAATTTCAA
TCAAATGAGAATCAAATTTGACAGCAAACATAAAAACTGTAAATATTTCG
TGAATGAGTTACTTATTGCATTCTCATTACCTCCAAAATACACTTTCACA
AAAGTCAAAAAAGAATCATGGTGGGGAAGTGTTTCAAGATCATCATCAAG
TTGCAGCTCGTGGAAAAACACCAATGATGTCCTCAAATTATTTCTACGTG
GCATTGAAGCTGAAACAAAATGGCTGCAAGATTTATTCATTGGAATGAAA
TTTGATCAACATCAAGTTGAAAGATTGGTCATAAAGTTGAAAGAAGAAAT
TGGAGGTAACATAAAATCTAATGGTTTCACCTTGAGCACTTTATTCATCA
CACTTACTGAAGTTCTCTTGAGTGAAATTGACCAGAACTTTTGGGAGATG
TTCAATTTAGATGAAAATACAAGAAAAACGTTCGCATTCATTGTGCCAAA
GTTGCTGGCTGCCACATTAGCTGCTGACCGATATATTGCTCTGTTTTGGC
TTGTCATTGGTTTATTGTTATTGATATTTAAAAAGATCTCGGAACGTTAC
AATTTACATGATTTATTTGGCGGAGAAGCAGATTATGAACGATTCTTCCA
ACTTTGTGAAAAAGTCTTGTTACCGTTGACACAAAGCTTATATCAACATT
GGATGAATTCGAATTAAATGGAGCTCATCAGTGAAGACTTGGAAATCTTT
CAAGAAGATGTCCATCAGTTCTGTCAAAATTTCAATCAAATGAGAATCAA
ATTTGACAGCAAACATAAAAACTGTAAATATTTCGTGAATGAGTTACTTA
TTGCATTCTCATTACCTCCAAAATACACTTTCACAAAAGTCAAAAAAGAA
TCATGGTGGGGAAGTGTTTCAAGATCATCATCAAGTTGCAGCTCGTGGAA
AAACACCAATGATGTCCTCAAATTATTTCTACGTGGCATTGAAGCTGAAA
CAAAATGGCTGCAAGATTTATTCATTGGAATGAAATTTGATCAACATCAA
GTTGAAAGATTGGTCATAAAGTTGAAAGAAGAAATTGGAGGTAACATAAA
ATCTAATGGTTTCACCTTGAGCACTTTATTCATCACACTTACTGAAGTTC
TCTTGAGTGAAATTGACCAGAACTTTTGGGAGATGTTCAATTTAGATGAA
AATACAAGAAAAACGTTCGCATTCATTGTGCCAAAGTTGCTGGCTGCCAC
ATTAGCTGCTGACCGATATATTGCTCTGTTTTGGCTTGTCATTGGTTTAT
TGTTATTGATATTTAAAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027864XLOC_027864Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044220-proteinTCONS_00044220-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044220-exon-sc0005188-1575043694:3007..3792TCONS_00044220-exon-sc0005188-1575043694:3007..3792Clytia hemisphaericaexon
TCONS_00044220-exon-sc0005188-1575043694:1..2406TCONS_00044220-exon-sc0005188-1575043694:1..2406Clytia hemisphaericaexon
TCONS_00044220-exon-sc0005188-1510915933:3007..3792TCONS_00044220-exon-sc0005188-1510915933:3007..3792Clytia hemisphaericaexon
TCONS_00044220-exon-sc0005188-1510915933:1..2406TCONS_00044220-exon-sc0005188-1510915933:1..2406Clytia hemisphaericaexon
TCONS_00044220-exon-sc0005188-1491911889:3007..3792TCONS_00044220-exon-sc0005188-1491911889:3007..3792Clytia hemisphaericaexon
TCONS_00044220-exon-sc0005188-1491911889:1..2406TCONS_00044220-exon-sc0005188-1491911889:1..2406Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005188supercontigsc0005188:1..3792 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.69847	2.78348	4.25132	3.54943	0.722085	0.525368	3.18178	3.57564	4.97532	4.73639	3.22752	3.6077	3.11918	3.35658	6.18283	4.45047	1.91497	2.46426	6.56554	9.93497	2.35777	2.98009	5.72825	6.71746	7.79661	10.1855	21.0175	20.6222	2.22474	2.76527
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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