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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044209 ID=TCONS_00044209|Name=TCONS_00044209|organism=Clytia hemisphaerica|type=transcript|length=1145bp
GAAGTAATTGGTGTCACAACAAGCTTAATGGTTTTATTAAGCTTATTCAC
TGTCGTTGGGAATCTTATGGTTATTTACATCTTCGTCAAACACAAAAACT
TACAGATTGCAAAAAACTATTTCATATTATCTCTAGCAATTGCTGATGTT
TTCATTGGTacattttcaatcaatttttataACGTTTATCTCGCTTTTGG
TGGATGGCCTTTTGGTAATATTTCATGTGATTTATGGCTTTCTATGGATT
ATTCATGTTGTAATGTTTCAACGTTAACTTTACTAGCCATCTCAATAGAA
CGATTTGTCGGTGTACATTACACAGCTTTCCACCGCAACCAATTCACAAA
GAAACGATTGAAGCGAACAATTTTCATAATTTGGCTTATATCATTCTTAG
TATGGTTTCCTGCTATTTTTGCTTATCCATACATTCACGGCGAACGAACA
GTAAAAGACGGACAATGTTATGTACAATTTTTATATGAAAGCCCGAGTAT
GACTATTGTTACTGCCTTCATTAATTTTTATGGGCCAATCATTTTCATGG
TGATTATTTACATATTAATATCAAGAACACTAATTAAAAGATACAAACGG
AAATATCATCTAAGAGAGAATTCAATACCACCCGAGACAAGCTCTGAACG
GCGACCTTCCAGTTCGCGAGAACGAAAATATTCAGTACGTCCGTCAATCG
CTTCAACAACTGTAATTTCACCAGAAAGACGACCAACTATCGCAACCATT
ATTGGTTCTCCCTCTGAAATGGATAGAATGAGAAAAAGCTATGAATCCAT
TGTGTCTGGCGATGCGAACTCAAATTCTAAAAGGAAGCCTAATAAGCCAA
AAACGCAACGCGAAAAAGACTACTTATCACATAAAAGAGCAATTACTCTG
TTATTACTTATCATTGGTGCATTTGCTATCACGTGGTTTCCATATAACCT
TATGGCGGTGATCGCACCATTTTGTAGAAAATGCATCCATGCTGATTGGT
GGCATTTTGGTTACATTTTCTGCTACGTTAACTCCCTATTAAACCCATTG
TGCTATGCTTTTGGTAATCGGCATTTCAAGAAATATATCAAAGAGATTTT
CGTAGCAATCAAAAAAAGGATCTGTTGTCCAAAAGCTGGTTCAGT Run BLAST on NCBI protein sequence of TCONS_00044209-protein >TCONS_00044209-protein ID=TCONS_00044209-protein|Name=TCONS_00044209-protein|organism=Clytia hemisphaerica|type=polypeptide|length=381bp
EVIGVTTSLMVLLSLFTVVGNLMVIYIFVKHKNLQIAKNYFILSLAIADV
FIGTFSINFYNVYLAFGGWPFGNISCDLWLSMDYSCCNVSTLTLLAISIE
RFVGVHYTAFHRNQFTKKRLKRTIFIIWLISFLVWFPAIFAYPYIHGERT
VKDGQCYVQFLYESPSMTIVTAFINFYGPIIFMVIIYILISRTLIKRYKR
KYHLRENSIPPETSSERRPSSSRERKYSVRPSIASTTVISPERRPTIATI
IGSPSEMDRMRKSYESIVSGDANSNSKRKPNKPKTQREKDYLSHKRAITL
LLLIIGAFAITWFPYNLMAVIAPFCRKCIHADWWHFGYIFCYVNSLLNPL
CYAFGNRHFKKYIKEIFVAIKKRICCPKAGS Run BLAST on NCBI transcript from alignment at sc0005164:834..1978 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044209 ID=TCONS_00044209|Name=TCONS_00044209|organism=Clytia hemisphaerica|type=transcript|length=1145bp|location=Sequence derived from alignment at sc0005164:834..1978 (Clytia hemisphaerica)
ACTGAACCAGCTTTTGGACAACAGATCCTTTTTTTGATTGCTACGAAAAT
CTCTTTGATATATTTCTTGAAATGCCGATTACCAAAAGCATAGCACAATG
GGTTTAATAGGGAGTTAACGTAGCAGAAAATGTAACCAAAATGCCACCAA
TCAGCATGGATGCATTTTCTACAAAATGGTGCGATCACCGCCATAAGGTT
ATATGGAAACCACGTGATAGCAAATGCACCAATGATAAGTAATAACAGAG
TAATTGCTCTTTTATGTGATAAGTAGTCTTTTTCGCGTTGCGTTTTTGGC
TTATTAGGCTTCCTTTTAGAATTTGAGTTCGCATCGCCAGACACAATGGA
TTCATAGCTTTTTCTCATTCTATCCATTTCAGAGGGAGAACCAATAATGG
TTGCGATAGTTGGTCGTCTTTCTGGTGAAATTACAGTTGTTGAAGCGATT
GACGGACGTACTGAATATTTTCGTTCTCGCGAACTGGAAGGTCGCCGTTC
AGAGCTTGTCTCGGGTGGTATTGAATTCTCTCTTAGATGATATTTCCGTT
TGTATCTTTTAATTAGTGTTCTTGATATTAATATGTAAATAATCACCATG
AAAATGATTGGCCCATAAAAATTAATGAAGGCAGTAACAATAGTCATACT
CGGGCTTTCATATAAAAATTGTACATAACATTGTCCGTCTTTTACTGTTC
GTTCGCCGTGAATGTATGGATAAGCAAAAATAGCAGGAAACCATACTAAG
AATGATATAAGCCAAATTATGAAAATTGTTCGCTTCAATCGTTTCTTTGT
GAATTGGTTGCGGTGGAAAGCTGTGTAATGTACACCGACAAATCGTTCTA
TTGAGATGGCTAGTAAAGTTAACGTTGAAACATTACAACATGAATAATCC
ATAGAAAGCCATAAATCACATGAAATATTACCAAAAGGCCATCCACCAAA
AGCGAGATAAACGTtataaaaattgattgaaaatgtACCAATGAAAACAT
CAGCAATTGCTAGAGATAATATGAAATAGTTTTTTGCAATCTGTAAGTTT
TTGTGTTTGACGAAGATGTAAATAACCATAAGATTCCCAACGACAGTGAA
TAAGCTTAATAAAACCATTAAGCTTGTTGTGACACCAATTACTTC Coding sequence (CDS) from alignment at sc0005164:834..1978 >TCONS_00044209 ID=TCONS_00044209|Name=TCONS_00044209|organism=Clytia hemisphaerica|type=CDS|length=1143bp|location=Sequence derived from alignment at sc0005164:834..1978 (Clytia hemisphaerica)
TGAACCAGCTTTTGGACAACAGATCCTTTTTTTGATTGCTACGAAAATCT
CTTTGATATATTTCTTGAAATGCCGATTACCAAAAGCATAGCACAATGGG
TTTAATAGGGAGTTAACGTAGCAGAAAATGTAACCAAAATGCCACCAATC
AGCATGGATGCATTTTCTACAAAATGGTGCGATCACCGCCATAAGGTTAT
ATGGAAACCACGTGATAGCAAATGCACCAATGATAAGTAATAACAGAGTA
ATTGCTCTTTTATGTGATAAGTAGTCTTTTTCGCGTTGCGTTTTTGGCTT
ATTAGGCTTCCTTTTAGAATTTGAGTTCGCATCGCCAGACACAATGGATT
CATAGCTTTTTCTCATTCTATCCATTTCAGAGGGAGAACCAATAATGGTT
GCGATAGTTGGTCGTCTTTCTGGTGAAATTACAGTTGTTGAAGCGATTGA
CGGACGTACTGAATATTTTCGTTCTCGCGAACTGGAAGGTCGCCGTTCAG
AGCTTGTCTCGGGTGGTATTGAATTCTCTCTTAGATGATATTTCCGTTTG
TATCTTTTAATTAGTGTTCTTGATATTAATATGTAAATAATCACCATGAA
AATGATTGGCCCATAAAAATTAATGAAGGCAGTAACAATAGTCATACTCG
GGCTTTCATATAAAAATTGTACATAACATTGTCCGTCTTTTACTGTTCGT
TCGCCGTGAATGTATGGATAAGCAAAAATAGCAGGAAACCATACTAAGAA
TGATATAAGCCAAATTATGAAAATTGTTCGCTTCAATCGTTTCTTTGTGA
ATTGGTTGCGGTGGAAAGCTGTGTAATGTACACCGACAAATCGTTCTATT
GAGATGGCTAGTAAAGTTAACGTTGAAACATTACAACATGAATAATCCAT
AGAAAGCCATAAATCACATGAAATATTACCAAAAGGCCATCCACCAAAAG
CGAGATAAACGTtataaaaattgattgaaaatgtACCAATGAAAACATCA
GCAATTGCTAGAGATAATATGAAATAGTTTTTTGCAATCTGTAAGTTTTT
GTGTTTGACGAAGATGTAAATAACCATAAGATTCCCAACGACAGTGAATA
AGCTTAATAAAACCATTAAGCTTGTTGTGACACCAATTACTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044209-exon-sc0005164-1491911889:834..1978 | TCONS_00044209-exon-sc0005164-1491911889:834..1978 | Clytia hemisphaerica | exon |
| TCONS_00044209-exon-sc0005164-1510915933:834..1978 | TCONS_00044209-exon-sc0005164-1510915933:834..1978 | Clytia hemisphaerica | exon |
| TCONS_00044209-exon-sc0005164-1575043694:834..1978 | TCONS_00044209-exon-sc0005164-1575043694:834..1978 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005164 | supercontig | sc0005164:834..1978 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
| GO:0016907 | G-protein coupled acetylcholine receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
| GO:0005887 | integral component of plasma membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| cellular_component |
GO:0005887 |
integral component of plasma membrane |
| molecular_function |
GO:0016907 |
G-protein coupled acetylcholine receptor activity |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
BLAST of TCONS_00044209 vs. Swiss-Prot (Human)
Match: ACM1 (Muscarinic acetylcholine receptor M1 OS=Homo sapiens GN=CHRM1 PE=1 SV=2) HSP 1 Score: 169.474 bits (428), Expect = 2.804e-47 Identity = 90/203 (44.33%), Postives = 121/203 (59.61%), Query Frame = 1
Query: 7 IGVTTSLMVLLSLFTVVGNLMVIYIFVKHKNLQIAKNYFILSLAIADVFIGTFSINFYNVYLAFGGWPFGNISCDLWLSMDYSCCNVSTLTLLAISIERFVGVHYTAFHRNQFTKKRLKRTIFIIWLISFLVWFPAIFAYPYIHGERTVKDGQCYVQFLYESPSMTIVTAFINFYGPIIFMVIIYILISRTLIKRYKRKYHLR 615
IG+TT L LSL TV GNL+V+ F + L+ NYF+LSLA AD+ IGTFS+N Y YL G W G ++CDLWL++DY N S + LL IS +R+ V +R + T +R I + WL+SF++W PAI + Y+ GERTV GQCY+QFL + P +T TA FY P+ M +Y I R R + L+
Sbjct: 28 IGITTGL---LSLATVTGNLLVLISFKVNTELKTVNNYFLLSLACADLIIGTFSMNLYTTYLLMGHWALGTLACDLWLALDYVASNASVMNLLLISFDRYFSVTRPLSYRAKRTPRRAALMIGLAWLVSFVLWAPAILFWQYLVGERTVLAGQCYIQFLSQ-PIITFGTAMAAFYLPVTVMCTLYWRIYRETENRARELAALQ 226
The following BLAST results are available for this feature:
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