TCONS_00044207 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044207
Unique NameTCONS_00044207
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length792

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044207 ID=TCONS_00044207|Name=TCONS_00044207|organism=Clytia hemisphaerica|type=transcript|length=792bp
ctcaaaaatgccaaaaaataagaacaatttaagaacagtggagaggctga
agttagagagttatagcaaatagaatcactggtttctaaaatcctctaaa
tagtaaaataaatagccaaaacttgttttttaccttagaaaaaatacgaa
caaaataagaacaattcaaggctcaaagtgccaaaaaaataagaacagcc
gagcctcagcaaaaatttactggttcttataaaaaaaaagtgtaaccaGC
AAAATAAGACACGGCAAAAATACCTTCAAATTTGAGATTTTCGACTTCGA
AGAACAAATTCTTCTTAGTGGCTGTATCACGTTGTATGAAACTATCCGAA
GAATTCTCACGGCTCAAACCGAAATTGATTGATTTCTTGACATTGAGTAG
ATTTAATCCACATGTTTCAACAAGGTTTGATTTGGTTGGCGTGTCATCAC
TATGGTTACCACCACCGTTGCTATGATACGGACTCGATCCAGTCTCTTGA
TCACAAGTGATGGTAATGTGATTACGTCTGCTTTCTAATTTCTCTGGTGT
CCCAAACATTGACTGTGTTTTAAACCTGTGATTTCTTGTTTTTCTTCTAT
TCTGAAACATAGAGTAATTCATtgttttgaaacgttacgtggCTCATCAC
TCTACGTAATCAGTGTAAAAGAACACTTTCATTTTATATAAATTTGTTAT
GAGCAAAAGAAGCAAAACTATAATTATATTCAATAATTATATCATTTAAT
TATCAAAGATGAGTCAGACATATTTCACACCTTACACAAAAG
Run BLAST on NCBI

protein sequence of TCONS_00044207-protein

>TCONS_00044207-protein ID=TCONS_00044207-protein|Name=TCONS_00044207-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
MNYSMFQNRRKTRNHRFKTQSMFGTPEKLESRRNHITITCDQETGSSPYH
SNGGGNHSDDTPTKSNLVETCGLNLLNVKKSINFGLSRENSSDSFIQRDT
ATKKNLFFEVENLKFEGIFAVSYFAGYTFFL
Run BLAST on NCBI

transcript from alignment at sc0005158:564..1355

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044207 ID=TCONS_00044207|Name=TCONS_00044207|organism=Clytia hemisphaerica|type=transcript|length=792bp|location=Sequence derived from alignment at sc0005158:564..1355 (Clytia hemisphaerica)
CTTTTGTGTAAGGTGTGAAATATGTCTGACTCATCTTTGATAATTAAATG
ATATAATTATTGAATATAATTATAGTTTTGCTTCTTTTGCTCATAACAAA
TTTATATAAAATGAAAGTGTTCTTTTACACTGATTACGTAGAGTGATGAG
ccacgtaacgtttcaaaacaATGAATTACTCTATGTTTCAGAATAGAAGA
AAAACAAGAAATCACAGGTTTAAAACACAGTCAATGTTTGGGACACCAGA
GAAATTAGAAAGCAGACGTAATCACATTACCATCACTTGTGATCAAGAGA
CTGGATCGAGTCCGTATCATAGCAACGGTGGTGGTAACCATAGTGATGAC
ACGCCAACCAAATCAAACCTTGTTGAAACATGTGGATTAAATCTACTCAA
TGTCAAGAAATCAATCAATTTCGGTTTGAGCCGTGAGAATTCTTCGGATA
GTTTCATACAACGTGATACAGCCACTAAGAAGAATTTGTTCTTCGAAGTC
GAAAATCTCAAATTTGAAGGTATTTTTGCCGTGTCTTATTTTGCtggtta
cactttttttttataagaaccagtaaatttttgctgaggctcggctgttc
ttatttttttggcactttgagccttgaattgttcttattttgttcgtatt
ttttctaaggtaaaaaacaagttttggctatttattttactatttagagg
attttagaaaccagtgattctatttgctataactctctaacttcagcctc
tccactgttcttaaattgttcttattttttggcatttttgag

Coding sequence (CDS) from alignment at sc0005158:564..1355

>TCONS_00044207 ID=TCONS_00044207|Name=TCONS_00044207|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0005158:564..1355 (Clytia hemisphaerica)
ATGAATTACTCTATGTTTCAGAATAGAAGAAAAACAAGAAATCACAGGTT
TAAAACACAGTCAATGTTTGGGACACCAGAGAAATTAGAAAGCAGACGTA
ATCACATTACCATCACTTGTGATCAAGAGACTGGATCGAGTCCGTATCAT
AGCAACGGTGGTGGTAACCATAGTGATGACACGCCAACCAAATCAAACCT
TGTTGAAACATGTGGATTAAATCTACTCAATGTCAAGAAATCAATCAATT
TCGGTTTGAGCCGTGAGAATTCTTCGGATAGTTTCATACAACGTGATACA
GCCACTAAGAAGAATTTGTTCTTCGAAGTCGAAAATCTCAAATTTGAAGG
TATTTTTGCCGTGTCTTATTTTGCtggttacactttttttttataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027851XLOC_027851Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044207-proteinTCONS_00044207-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044207-exon-sc0005158-1491911889:564..1355TCONS_00044207-exon-sc0005158-1491911889:564..1355Clytia hemisphaericaexon
TCONS_00044207-exon-sc0005158-1510915933:564..1355TCONS_00044207-exon-sc0005158-1510915933:564..1355Clytia hemisphaericaexon
TCONS_00044207-exon-sc0005158-1575043694:564..1355TCONS_00044207-exon-sc0005158-1575043694:564..1355Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005158supercontigsc0005158:564..1355 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.1404	6.74494	12.0217	11.4958	219.396	166.722	40.2642	44.4225	21.9954	25.0644	18.4918	18.2721	8.88449	8.54029	14.4198	17.5029	21.0591	18.5427	6.38745	9.32178	15.158	14.2004	10.8977	11.9027	16.8414	15.5835	13.3089	9.73074	9.48274	9.38692
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044207 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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