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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044203 ID=TCONS_00044203|Name=TCONS_00044203|organism=Clytia hemisphaerica|type=transcript|length=2079bp
AAATAATGACAGATGATTTCTTTTAAATGTTAACTTGCATAAAAaagcgc
taataatgtgtattttgaCAACTagcaaaatcatgaaaatattgaCTCCT
AATaatgccatccgcgaaattaagccccgcgaaaattaatcccattaatA
TAGCTGGATGTAGCCCCACgaacgaaaattaaaaaaaagtgacgATTTAA
AGGTGTCACAAACAGCACGAAAAGTCCAAAAGTTTGTCGattctcataaa
aaagacaTTTTCTACAAAATTGAGTCTGGTCACACTCTTCTGATTTCCCT
TCTtatatatgatttttttttacttttaagtgTTATAAACTCGTCGTTAA
AGCAGCAAAAAGTAGTTAAAAAGTTGCTTAAAGGTGAAGTACGCACTCCA
GATTGATCCAGAAGTTCCGAAAATTGTGAAGAAACGTCCAAAAATGAACA
ATTATTTAAACTGACGTTATTTTTGGCCTTCTTCttaccttttcttttct
tttcattcaCGAAAGACAGTTCACCACTTCAAATGGGATCGAGCCGAACG
AACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTTCTTTATGGGTACA
GAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAACAAATACTTTATAT
ATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAATCCTGGACCATCG
CCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACCAGAAAAGATTCTA
ATGCACCTCCTGGGTTGATATAACTCACGTTTATTACACGAAAATCGACC
GAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGGTTTGTCCAACTTG
CATCCATACAGAGCTTCCATTTCCCGACATCTCAGACCAAGATTTACTCG
ACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTTCATCCAAACAACG
GACCAGATAATCTTCAACCAAAATCCACCATCCCGAACGAGCGTAAATGT
CATCCCAGCGAAATAAGTGATCACGCTGGATCACGACCTCACTTATACTA
TTATGAACATTCGAAAACAAAGGTTCGAGCCATGGCACAAGATCATCCGA
AACGAAAAGAATTTCTCACTTCGAGATTATGTGAGGATTTTTCTCAGCTC
CCTTTGAACATTATTTACAGTTTTTATGATCCCGATGCTCAAGTCGATAA
ACGCTTTAACACGCTAATTACTAACTGCTTATCCAGACACGCTCCAGAGA
AACGAGTTAAGCTTACACGTCCCCTGCTCCGTGGATGCAAGATCCTGATA
TTGTCCGATCTAGAAACTATTTAGAAGACCTTCGAAAAAAGAAAAGTCGC
CGAATCAGATGATGGATACCGAAAGGTCAGAAACAGTCACAAAAATAATG
TTATTATCGCTCAGCCGGTCAGCGACTACATCACATCGCCCCTCGTTCAC
ATCATTAACAACTCAATTAAAACCGGTATCTTCCCGGACAAGTGTCTGCC
CTATCCTGAAGGTGAGAAATCCTGCGGTTTCAAAGGACTTTCGACCTGTT
TCTATTCTACATTTACTAccaaaggatttaaaaaaaatcattctcaTGCA
GATCCTTGATCACATCGAGTCAGGAAGTCATCGAAACCCCGTCAAATTCA
AATATCGGAGAATGTTATATCCTTGGAAAGGGATCTCACGGAACTATCGA
GATGGTACACCAATAATGGTCTAATATTCAAGGACGACGAACTTCAAATG
ATAGTATTTCACAAACCAAGACCCCTCCCTACTGACCGATCCTACCTTGT
TCGATCAAAAAATGGTCACTCTATTAAACAGGAGTTAACGGTAAGTCTTT
TGGGGGACATGATCGACCAAAACCTTACATGGATAGATCAAATTAATCAC
GTAACAAAATTTGCTCAGTCTTATCTTCAAGTGTTGAAGCAATTTCAACG
ATTTACACCTTTCAACGTCAGGAAAACGCTGGCAGNNNNgtactagtaat
cgtatggtttggagtgcaattaacgattaatcacgagtaacaaaggagaa
aatagtaatttgcacgagtccgaaggacg Run BLAST on NCBI transcript from alignment at sc0005153:1648..4031+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044203 ID=TCONS_00044203|Name=TCONS_00044203|organism=Clytia hemisphaerica|type=transcript|length=2384bp|location=Sequence derived from alignment at sc0005153:1648..4031+ (Clytia hemisphaerica)
AAATAATGACAGATGATTTCTTTTAAATGTTAACTTGCATAAAAaagcgc
taataatgtgtattttgaCAACTagcaaaatcatgaaaatattgaCTCCT
AATaatgccatccgcgaaattaagccccgcgaaaattaatcccattaatA
TAGCTGGATGTAGCCCCACgaacgaaaattaaaaaaaagtgacgATTTAA
AGGTGTCACAAACAGCACGAAAAGTCCAAAAGTTTGTCGattctcataaa
aaagacaTTTTCTACAAAATTGAGTCTGGTCACACTCTTCTGATTTCCCT
TCTtatatatgatttttttttacttttaagtgTTATAAACTCGTCGTTAA
AGCAGCAAAAAGTAGTTAAAAAGTTGCTTAAAGGTGAAGTACGCACTCCA
GATTGATCCAGAAGTTCCGAAAATTGTGAAGAAACGTCCAAAAATGAACA
ATTATTTAAACTGACGTTATTTTTGGCCTTCTTCttaccttttcttttct
tttcattcaCGAAAGACAGTTCACCACTTCAAATGGGATCGAGCCGAACG
AACAAATGTAACCTCGAAGAAACGTTTGTAGTCTCTTCTTTATGGGTACA
GAAAGTAAATCTTCAATCCAGAAGAAAGCTTAACAACAAATACTTTATAT
ATTTACTTCTACTGCTCTCGGTTGACATCGAAACCAATCCTGGACCATCG
CCATGTCAAATTTGTTTCAAGACAGTCCGTCGCAACCAGAAAAGATTCTA
ATGCACCTCCTGGGTTGATATAACTCACGTTTATTACACGAAAATCGACC
GAAAACTGTTAGTAGTCTAGAGATGAAACTCACTGGGTTTGTCCAACTTG
CATCCATACAGAGCTTCCATTTCCCGACATCTCAGACCAAGATTTACTCG
ACCTTCAACTCGATCGTCCAGTCGAACAACGGAAGTTCATCCAAACAACG
GACCAGATAATCTTCAACCAAAATCGTAAGCATACGTCCATTGCAAATTT
GAACACTCAATCTATCATGTCAACCTTCTCACAGTTTGAATGTTATAAGT
TTAATATTATCGCTGTTAGTGTTACCGAAACATGGATTACGAAcacaaaa
caagaaaaagtcGTAAAGATAGACAATTATCTTTTCATACCGAAAAATCG
ACTGAACGTAAAGGGAGTTGGAGTAGCTTTTTACATCCGAGAAGAGCTTA
CCTATAAAAAGGAGACTCGGCATTGAGAGATACAACATGAAAAGTAAaag
gtaaaaataaaaactctaTCACATTTCCAGCACCATCCCGAACGAGCGTA
AATGTCATCCCAGCGAAATAAGTGATCACGCTGGATCACGACCTCACTTA
TACTATTATGAACATTCGAAAACAAAGGTTCGAGCCATGGCACAAGATCA
TCCGAAACGAAAAGAATTTCTCACTTCGAGATTATGTGAGGATTTTTCTC
AGCTCCCTTTGAACATTATTTACAGTTTTTATGATCCCGATGCTCAAGTC
GATAAACGCTTTAACACGCTAATTACTAACTGCTTATCCAGACACGCTCC
AGAGAAACGAGTTAAGCTTACACGTCCCCTGCTCCGTGGATGCAAGATCC
TGATATTGTCCGATCTAGAAACTATTTAGAAGACCTTCGAAAAAAGAAAA
GTCGCCGAATCAGATGATGGATACCGAAAGGTCAGAAACAGTCACAAAAA
TAATGTTATTATCGCTCAGCCGGTCAGCGACTACATCACATCGCCCCTCG
TTCACATCATTAACAACTCAATTAAAACCGGTATCTTCCCGGACAAGTGT
CTGCCCTATCCTGAAGGTGAGAAATCCTGCGGTTTCAAAGGACTTTCGAC
CTGTTTCTATTCTACATTTACTAccaaaggatttaaaaaaaatcattctc
aTGCAGATCCTTGATCACATCGAGTCAGGAAGTCATCGAAACCCCGTCAA
ATTCAAATATCGGAGAATGTTATATCCTTGGAAAGGGATCTCACGGAACT
ATCGAGATGGTACACCAATAATGGTCTAATATTCAAGGACGACGAACTTC
AAATGATAGTATTTCACAAACCAAGACCCCTCCCTACTGACCGATCCTAC
CTTGTTCGATCAAAAAATGGTCACTCTATTAAACAGGAGTTAACGGTAAG
TCTTTTGGGGGACATGATCGACCAAAACCTTACATGGATAGATCAAATTA
ATCACGTAACAAAATTTGCTCAGTCTTATCTTCAAGTGTTGAAGCAATTT
CAACGATTTACACCTTTCAACGTCAGGAAAACGCTGGCAGNNNNgtacta
gtaatcgtatggtttggagtgcaattaacgattaatcacgagtaacaaag
gagaaaatagtaatttgcacgagtccgaaggacg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044203-exon-sc0005153-1491911889:1648..2622 | TCONS_00044203-exon-sc0005153-1491911889:1648..2622 | Clytia hemisphaerica | exon |
| TCONS_00044203-exon-sc0005153-1510915933:1648..2622 | TCONS_00044203-exon-sc0005153-1510915933:1648..2622 | Clytia hemisphaerica | exon |
| TCONS_00044203-exon-sc0005153-1575043694:1648..2622 | TCONS_00044203-exon-sc0005153-1575043694:1648..2622 | Clytia hemisphaerica | exon |
| TCONS_00044203-exon-sc0005153-1491911889:2928..4031 | TCONS_00044203-exon-sc0005153-1491911889:2928..4031 | Clytia hemisphaerica | exon |
| TCONS_00044203-exon-sc0005153-1510915933:2928..4031 | TCONS_00044203-exon-sc0005153-1510915933:2928..4031 | Clytia hemisphaerica | exon |
| TCONS_00044203-exon-sc0005153-1575043694:2928..4031 | TCONS_00044203-exon-sc0005153-1575043694:2928..4031 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005153 | supercontig | sc0005153:1648..4031 + |
Blast
The following BLAST results are available for this feature:
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