TCONS_00044196 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044196
Unique NameTCONS_00044196
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length583

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044196 ID=TCONS_00044196|Name=TCONS_00044196|organism=Clytia hemisphaerica|type=transcript|length=583bp
TTCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAGCGGCACCCTG
GGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATCG
ATGGAGCTGAAGCCATGGTCTGTGGGCATCCCATTGGACAAGAAGGTGCT
TGACAAGGTTGAGGACACATCTGTGGAGCAGCCATCATTGGAGCGGCTTG
CATACAGCCAGTTGGACAAGATGGAGGCATACAGGGCTGTGGACACATCG
AAGGCATGGAAGCCATGGTCATGGGGCAACCCATTGGACAACCTGGAGCT
TGACAAGGTTGTGGACACATCATCGGCTGAGGTGGTGGCATTTGCTGAAG
GAGCTTCTCTGGCGAGAAATAAAATCGTGGCGACTCTTGACATCCAGAAG
GACAGCCTGGTTGTTGACAGGGCTGTGGACACATTGTTGGAGCTGAAGCC
ATGGTTTGCGGGCATCCCATAGGGCACCCTGGAGCTTGGCAAGGTTGTGG
GCACATCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAGCGGCAC
CCTGGGCACATCCTGAGGGGCACGATGGTGGCA
Run BLAST on NCBI

transcript from alignment at sc0005141:4083..4833+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044196 ID=TCONS_00044196|Name=TCONS_00044196|organism=Clytia hemisphaerica|type=transcript|length=751bp|location=Sequence derived from alignment at sc0005141:4083..4833+ (Clytia hemisphaerica)
TTCTGTGGAGCAGCCATCATGGGAGGTGGCATCATCATAGCGGCACCCTG
GGCACATCCTGAGGGGCACGATGGTGGCATGCATGGTCTTGGACACATTG
TTGGAGCTGAAGCCATGGTCTGCGGGCATCCCATAGGGCACCCTGGAGCT
TGGCAGGGTTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGGTGGCAT
CATCATAGCGGCACCCTGGGCACATCCTGAGGGGCACGATGGTGGCATGC
ATGGTCTTGGACACATCGATGGAGCTGAAGCCATGGTCTGTGGGCATCCC
ATTGGACAAGAAGGTGCTTGACAAGGTTGAGGACACATCTGTGGAGCAGC
CATCATTGGAGCGGCTTGCATACAGCCAGTTGGACAAGATGGAGGCATAC
AGGGCTGTGGACACATCGAAGGCATGGAAGCCATGGTCATGGGGCAACCC
ATTGGACAACCTGGAGCTTGACAAGGTTGTGGACACATCATCGGCTGAGG
TGGTGGCATTTGCTGAAGGAGCTTCTCTGGCGAGAAATAAAATCGTGGCG
ACTCTTGACATCCAGAAGGACAGCCTGGTTGTTGACAGGGCTGTGGACAC
ATTGTTGGAGCTGAAGCCATGGTTTGCGGGCATCCCATAGGGCACCCTGG
AGCTTGGCAAGGTTGTGGGCACATCTGTGGAGCAGCCATCATGGGAGGTG
GCATCATCATAGCGGCACCCTGGGCACATCCTGAGGGGCACGATGGTGGC
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027842XLOC_027842Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044196-exon-sc0005141-1491911889:4083..4178TCONS_00044196-exon-sc0005141-1491911889:4083..4178Clytia hemisphaericaexon
TCONS_00044196-exon-sc0005141-1510915933:4083..4178TCONS_00044196-exon-sc0005141-1510915933:4083..4178Clytia hemisphaericaexon
TCONS_00044196-exon-sc0005141-1575043694:4083..4178TCONS_00044196-exon-sc0005141-1575043694:4083..4178Clytia hemisphaericaexon
TCONS_00044196-exon-sc0005141-1491911889:4347..4833TCONS_00044196-exon-sc0005141-1491911889:4347..4833Clytia hemisphaericaexon
TCONS_00044196-exon-sc0005141-1510915933:4347..4833TCONS_00044196-exon-sc0005141-1510915933:4347..4833Clytia hemisphaericaexon
TCONS_00044196-exon-sc0005141-1575043694:4347..4833TCONS_00044196-exon-sc0005141-1575043694:4347..4833Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005141supercontigsc0005141:4083..4833 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.189721	0.132019	0.107406	0.393044	5.30175	8.1366	45.8196	50.5774	4.29787	5.0673	46.3234	19.0279	32.2779	27.9831	20.4661	79.9283	54.3433	39.8339	0.595065	0	31.2308	35.0749	17.8596	18.8308	27.8139	28.2674	4.31408	0.52216	0.105288	0.107271
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044196 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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