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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044185 ID=TCONS_00044185|Name=TCONS_00044185|organism=Clytia hemisphaerica|type=transcript|length=309bp
AAATTAGTTCccaagttcccttaaggtacttatTTTCAAAACGGCGAAAT
TAAATTCTAGTACCTACATCATTATCATTTTTTTGCAGATTTCAACATTC
AAACAACAAACAGAAGTCAATCCATAGAACACCAAACAATCGACAATGAT
ACAACGACAAAAAACAATTCAGTGTTGAAACCTAAATGTCAAGCTGAAGT
ACCTGAGGAAAATGTTTCAGATAATGAGAAATCCCCAATCTATCAGCGCA
TGGAACCAAAAGAAAATCAATTGAGACAAATCCAAACCATGCTGGTTCCT
GACATTGTG Run BLAST on NCBI transcript from alignment at sc0005127:3383..4688- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044185 ID=TCONS_00044185|Name=TCONS_00044185|organism=Clytia hemisphaerica|type=transcript|length=1306bp|location=Sequence derived from alignment at sc0005127:3383..4688- (Clytia hemisphaerica)
AAATTAGTTCCCAAGTTCCCTTAAGGTACTTATTTTCAAAACGGCGAAAT
TAAATTCTAGTACCTACATCATTATCATTTTTTTGCAGATTTCAACATTC
AAACAACAAACAGAAGTCAATCCATAGAACACCAAACAATCGACAATGAT
ACAACGACAAAAAACAATTCAGTGTTGAAACCTAAATGTCAAGCTGAAGT
ACCTGAGGAAAATGGTAAATACTGAACTTTTAGGTCTTTCCTAGATTTGA
AATTACTGCACAGTAATGTGAGTGGTTTTCAGAGTCTTGAAACGTTGAAA
CATTGTTCCTTATTTAAGTCTTTTCTCATTTGGTTCTTATCAATTATTTG
TGCAGTATAACTCGGAAGATATCAAATAAACAATTTCATTACCTTAAGGG
ATCTGGTTCACTCCGAAGACAACCAAAGGAATAAATGATCAGCGCACCAA
CATGTTGAAACTGCCCAGTCCAGTTTTTTCTGAAAAAGGTAATCATAAAA
TGGTACAAAATTGTTGAAATAATCCAAACATCAGTTATTGCTAATTCCAT
TAGGGAACCAAAATATATAATGCTCTGAGGGAGAAGAAGTACATTGCCAA
TATTAAGCATAGATAATCAAACAATTTCTTATAAGATACCATAGTGTCAT
TCTGATTTTGGCCCTTTTTTTAAAGTATGGGGGAAAATGAAAAATTTGAA
ATTTGCTGGGGGGAAATAAAGAGGGGGAAAAGATCATTTTGATAGCAGCT
TAACAAAACCAAAACTCTTTCCTTTTCATTAGTTTCAGATAATGAGAAAT
CCCCAATCTATCAGCGCATGGAACCAAAAGGTACACCATCTTATTTTTTT
TAAAGACCTATAACATTTTTAATAAGGTAACAATAAATTATCATTAGCAA
GGGAATAAGCATATGACAATAAATCTTTAAAATTTATAGCTAAAGTGTCC
TGCACCAATTGCAGAACTGTAATGGCTGAATTGGAGGAGACCAAAAGAAA
ACTCAAAGAAAAAGGTCAGTTTACACCACTTTAATCACTTAATTAAATTT
TTGATATTGCTATTCAATAAATGTTGCAACATGTCCATTCATTTTTTCTG
AATTGCCTAATTGTTAAAATTATGTAGAACTTCAAATTGCAACAATGAAA
ACAAAAACAAAATTTAATCATCTGAATGCTTAAACATCTCAGGGCTGGTT
AGGAAGTCAGCGATAAGTAACACCTTTAAGAATGTAACGATAAGATTATC
TTCTCTTAGAAAATCAATTGAGACAAATCCAAACCATGCTGGTTCCTGAC
ATTGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044185-exon-sc0005127-1575043694:4475..4688 | TCONS_00044185-exon-sc0005127-1575043694:4475..4688 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1575043694:3859..3906 | TCONS_00044185-exon-sc0005127-1575043694:3859..3906 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1575043694:3383..3429 | TCONS_00044185-exon-sc0005127-1575043694:3383..3429 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1510915933:4475..4688 | TCONS_00044185-exon-sc0005127-1510915933:4475..4688 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1510915933:3859..3906 | TCONS_00044185-exon-sc0005127-1510915933:3859..3906 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1510915933:3383..3429 | TCONS_00044185-exon-sc0005127-1510915933:3383..3429 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1491911889:4475..4688 | TCONS_00044185-exon-sc0005127-1491911889:4475..4688 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1491911889:3859..3906 | TCONS_00044185-exon-sc0005127-1491911889:3859..3906 | Clytia hemisphaerica | exon |
| TCONS_00044185-exon-sc0005127-1491911889:3383..3429 | TCONS_00044185-exon-sc0005127-1491911889:3383..3429 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005127 | supercontig | sc0005127:3383..4688 - |
Blast
The following BLAST results are available for this feature:
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