TCONS_00044169 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044169
Unique NameTCONS_00044169
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044169 ID=TCONS_00044169|Name=TCONS_00044169|organism=Clytia hemisphaerica|type=transcript|length=237bp
TTTCAGCCCTGGGAAAGATTTAGTGAGTTTTTGGACGAAACAATGTGTGG
ATATTTTTGGCGCCAATTTCAACGAGACGAGTATCAACCGAGCTGTTGAT
TGGACCAATGATAATTATGGTGGCTACAACATGAACCAACCAAGGattgt
CTTTCCGAACGGTTCAATAGATCCTTGGCATGCGTTGAGTTTCACCGATG
ATCATAAAGACATGATCGCTGTTTTCATTAAAGGTAT
Run BLAST on NCBI

transcript from alignment at sc0005104:3929..4705-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044169 ID=TCONS_00044169|Name=TCONS_00044169|organism=Clytia hemisphaerica|type=transcript|length=777bp|location=Sequence derived from alignment at sc0005104:3929..4705- (Clytia hemisphaerica)
TTTCAGCCCTGGGAAAGATTTAGTGAGGTAAAGTCAATTGTTAAAGCTTC
TCAATCTCGAAGCCGTACCCAGAGCAATTTCCACCATTTATTTTATTTTT
CTGGTGAACGTAAGTGCAATCGTAAGCAAAATCATAAGAAAATAACTGGG
TATTCCGTAGACTAATTTTTCTCTCGTGTTCACTTTATCTAGTTTTTGGA
CGAAACAATGTGTGGATATTTTTGGCGCCAATTTCAACGAGACGAGTATC
AACCGAGCTGTTGATTGGACCAATGATAATTATGGTGGCTACAACATGAA
CCAACCAAGGGTATTTCTTTTAAAACTCTTTAACGATTTGGAAAATTGAT
TTGAAAGCTATAGAAATGGGACAAGTTGGAGTTTTTGCAAGCTCTTATTT
TATTTGGTTGGTCGTTAACCTGTAATAATGAATTAAAAAACAATTTTGCG
TCAAATCCAGATTATATCATGGATATTGATAAATGTTTTCCCGTTACAGC
CATTTTTAAGCCATAGAAAATCATATACAACACTAAAAATCCATTTAGTT
CTCCGAACTATTTTTCATTGCATTGTGTTGACTGATATTCTCTAGAACGA
AATTTTGGAACTAATTTTAATCTCACTAAGAATTATAAACATGCTCAAAT
TATTGAGTATCACCGATACCTCTCTTTTTTTTCAGATTGTCTTTCCGAAC
GGTTCAATAGATCCTTGGCATGCGTTGAGTTTCACCGATGATCATAAAGA
CATGATCGCTGTTTTCATTAAAGGTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027815XLOC_027815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044169-exon-sc0005104-1575043694:4679..4705TCONS_00044169-exon-sc0005104-1575043694:4679..4705Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1575043694:4396..4513TCONS_00044169-exon-sc0005104-1575043694:4396..4513Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1575043694:3929..4020TCONS_00044169-exon-sc0005104-1575043694:3929..4020Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1510915933:4679..4705TCONS_00044169-exon-sc0005104-1510915933:4679..4705Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1510915933:4396..4513TCONS_00044169-exon-sc0005104-1510915933:4396..4513Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1510915933:3929..4020TCONS_00044169-exon-sc0005104-1510915933:3929..4020Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1491911889:4679..4705TCONS_00044169-exon-sc0005104-1491911889:4679..4705Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1491911889:4396..4513TCONS_00044169-exon-sc0005104-1491911889:4396..4513Clytia hemisphaericaexon
TCONS_00044169-exon-sc0005104-1491911889:3929..4020TCONS_00044169-exon-sc0005104-1491911889:3929..4020Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005104supercontigsc0005104:3929..4705 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.91084	11.2487	10.0527	11.3962	3.70831	0	0	0	2.98788	0	0	0	4.96326	3.76022	9.74221	16.8058	1.31764	0.233881	5.12473	4.41463	6.81819	3.90776	0	0	0	0	9.31986	2.7522	4.61285	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044169 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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