TCONS_00044168 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044168
Unique NameTCONS_00044168
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length287

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044168 ID=TCONS_00044168|Name=TCONS_00044168|organism=Clytia hemisphaerica|type=transcript|length=287bp
GAGAAAAACACTGAATCAAGATGGCGACCAAGAAAtgggtttttcaaact
tactgctaaagttcttggattttttgactggtttaggccACTTTTCTTCA
TGTTATTTCTCTTTTCAGAATACCACTTCACATCAAAGTCAAACCATATA
CTGTCAGCACGCAATTTCTCTTCATTTGACATTTAACGCATTTAACAAAA
TGATAACGAAGCGTTACTCCCTTGAGACCCGACAACAGATTCAGTGCAGC
CATCCGAAAATTGTTGCAGTGATTAAGAGCCGTTAAT
Run BLAST on NCBI

transcript from alignment at sc0005103:4299..4585

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044168 ID=TCONS_00044168|Name=TCONS_00044168|organism=Clytia hemisphaerica|type=transcript|length=287bp|location=Sequence derived from alignment at sc0005103:4299..4585 (Clytia hemisphaerica)
ATTAACGGCTCTTAATCACTGCAACAATTTTCGGATGGCTGCACTGAATC
TGTTGTCGGGTCTCAAGGGAGTAACGCTTCGTTATCATTTTGTTAAATGC
GTTAAATGTCAAATGAAGAGAAATTGCGTGCTGACAGTATATGGTTTGAC
TTTGATGTGAAGTGGTATTCTGAAAAGAGAAATAACATGAAGAAAAGTgg
cctaaaccagtcaaaaaatccaagaactttagcagtaagtttgaaaaacc
caTTTCTTGGTCGCCATCTTGATTCAGTGTTTTTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027814XLOC_027814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044168-exon-sc0005103-1491911889:4299..4585TCONS_00044168-exon-sc0005103-1491911889:4299..4585Clytia hemisphaericaexon
TCONS_00044168-exon-sc0005103-1510915933:4299..4585TCONS_00044168-exon-sc0005103-1510915933:4299..4585Clytia hemisphaericaexon
TCONS_00044168-exon-sc0005103-1575043694:4299..4585TCONS_00044168-exon-sc0005103-1575043694:4299..4585Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005103supercontigsc0005103:4299..4585 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.24119	4.75708	8.08792	4.83787	9.15057	11.9829	13.958	30.3943	12.5904	15.5818	15.0585	13.2113	15.1542	4.62815	2.28521	6.45031	2.99742	3.82873	10.9382	11.8597	9.76786	10.821	9.28992	15.518	12.1421	20.2745	48.7933	49.3913	52.0179	42.3724
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044168 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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