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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044157 ID=TCONS_00044157|Name=TCONS_00044157|organism=Clytia hemisphaerica|type=transcript|length=1365bp
TCAAGGGAAATTGAAACCATGTTAACTTTATGGAAAGCACTAGCCATCCC
TCATTTGGACTACTGCTCTCAACTCTGGTCTCCCTGGAAGGGTGGTCTTG
TCCAGCAACTGGAAGAAGTCCAGAAATCATTTTTACATGGAATTCCATTC
CTCAGACATCTCAATTATTGggaaaaactcaaatcattaaaaCTGTATAG
CCTTGAAAGACGGAGAGAGCGGTATCAAATAATTTATACCTGGAACGTCA
TTGAAGGCAACGTCCCGAATTTTGATTATGACGAAAGTAAAGGAGGCATT
TCCTGCCACATAAATCAGAGGTTGGGGAGCATTTGCAAtctaaaagctgt
caatatcaaacacaaaaatatctggagGGGAAGTCTTTCCCAAGAAGGCC
CTCGATTATTCAACACCCTTCCCAGACCAATAAGATATTTGACAAACTGC
CCCAAAGAAGTATTAAAAAAACACTTAGACACCTTCCTCACAACTGTTCC
TGACGAACCTCTGCTTGCCCACTATTTTAACCTTAGGCAAGCTGACTCCA
ACAGTCTCAAGGAAATGTCGAAGCATCAGACTCAACAAGTTGGATGAGCT
GTTCAagcaaaagccaaaaagaagTACAAAGAGGTACAAAggtaggaccc
tgccgacgcaccagatttaacgaacaccggacacgcaaaagtttggtgta
aaatgagaatctttctaccaccggacaatttttaccaccggacaatttct
acaccggacttaaggaagtcggatgtccggtgtcggagaaggatattttt
tcccaccggacaatcaaaacattggacatgaccagtccggtgcgtccggt
gtttcttaattttttgtttcataaatgtctggCGTCCAANttggacatga
ccagtccggtgcgtccggtgtttcttaattttttgtttcataaatgtctg
gcgtccaaaattccccctgtatgcaacaccagTCTGACACCGGActttgc
gtccggtgtagcaaAACGGACAAATACACTGGACATATAGcgctttgttt
acctcccaaaaagtGTTGCGTAGCAACAACAAGAGgaggtggaatttccg
ataaggtgtattgagggatttccctgactgaccTTACAATTCAAAGCaat
acaacaacaaaacaaaatagaagCATTCAAAAACATTGGAAACAGTAATA
CTCACTTTCtgagttttcattttcagtagtAGTTTCGGTTTTCACAGTTT
TTTTCTCGGTAGTTTTGGCTGGTTTGACATCTTTCTTTCCTTTGACTTTT
GGCTCCTTTtccttttttggtttttcttgaGCAGCTAGAATAAGTTCATA
GGGATCTTCGATGNN Run BLAST on NCBI protein sequence of TCONS_00044157-protein >TCONS_00044157-protein ID=TCONS_00044157-protein|Name=TCONS_00044157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=198bp
SREIETMLTLWKALAIPHLDYCSQLWSPWKGGLVQQLEEVQKSFLHGIPF
LRHLNYWEKLKSLKLYSLERRRERYQIIYTWNVIEGNVPNFDYDESKGGI
SCHINQRLGSICNLKAVNIKHKNIWRGSLSQEGPRLFNTLPRPIRYLTNC
PKEVLKKHLDTFLTTVPDEPLLAHYFNLRQADSNSLKEMSKHQTQQVG Run BLAST on NCBI transcript from alignment at sc0005081:3596..4960 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044157 ID=TCONS_00044157|Name=TCONS_00044157|organism=Clytia hemisphaerica|type=transcript|length=1365bp|location=Sequence derived from alignment at sc0005081:3596..4960 (Clytia hemisphaerica)
NNCATCGAAGATCCCTATGAACTTATTCTAGCTGCtcaagaaaaaccaaa
aaaggaAAAGGAGCCAAAAGTCAAAGGAAAGAAAGATGTCAAACCAGCCA
AAACTACCGAGAAAAAAACTGTGAAAACCGAAACTactactgaaaatgaa
aactcaGAAAGTGAGTATTACTGTTTCCAATGTTTTTGAATGcttctatt
ttgttttgttgttgtattGCTTTGAATTGTAAggtcagtcagggaaatcc
ctcaatacaccttatcggaaattccacctcCTCTTGTTGTTGCTACGCAA
CactttttgggaggtaaacaaagcgCTATATGTCCAGTGTATTTGTCCGT
TttgctacaccggacgcaaagTCCGGTGTCAGActggtgttgcatacagg
gggaattttggacgccagacatttatgaaacaaaaaattaagaaacaccg
gacgcaccggactggtcatgtccaaNTTGGACGccagacatttatgaaac
aaaaaattaagaaacaccggacgcaccggactggtcatgtccaatgtttt
gattgtccggtgggaaaaaatatccttctccgacaccggacatccgactt
ccttaagtccggtgtagaaattgtccggtggtaaaaattgtccggtggta
gaaagattctcattttacaccaaacttttgcgtgtccggtgttcgttaaa
tctggtgcgtcggcagggtcctaccTTTGTACCTCTTTGTActtcttttt
ggcttttgctTGAACAGCTCATCCAACTTGTTGAGTCTGATGCTTCGACA
TTTCCTTGAGACTGTTGGAGTCAGCTTGCCTAAGGTTAAAATAGTGGGCA
AGCAGAGGTTCGTCAGGAACAGTTGTGAGGAAGGTGTCTAAGTGTTTTTT
TAATACTTCTTTGGGGCAGTTTGTCAAATATCTTATTGGTCTGGGAAGGG
TGTTGAATAATCGAGGGCCTTCTTGGGAAAGACTTCCCctccagatattt
ttgtgtttgatattgacagcttttagaTTGCAAATGCTCCCCAACCTCTG
ATTTATGTGGCAGGAAATGCCTCCTTTACTTTCGTCATAATCAAAATTCG
GGACGTTGCCTTCAATGACGTTCCAGGTATAAATTATTTGATACCGCTCT
CTCCGTCTTTCAAGGCTATACAGttttaatgatttgagtttttccCAATA
ATTGAGATGTCTGAGGAATGGAATTCCATGTAAAAATGATTTCTGGACTT
CTTCCAGTTGCTGGACAAGACCACCCTTCCAGGGAGACCAGAGTTGAGAG
CAGTAGTCCAAATGAGGGATGGCTAGTGCTTTCCATAAAGTTAACATGGT
TTCAATTTCCCTTGA Coding sequence (CDS) from alignment at sc0005081:3596..4960 >TCONS_00044157 ID=TCONS_00044157|Name=TCONS_00044157|organism=Clytia hemisphaerica|type=CDS|length=597bp|location=Sequence derived from alignment at sc0005081:3596..4960 (Clytia hemisphaerica)
TCATCCAACTTGTTGAGTCTGATGCTTCGACATTTCCTTGAGACTGTTGG
AGTCAGCTTGCCTAAGGTTAAAATAGTGGGCAAGCAGAGGTTCGTCAGGA
ACAGTTGTGAGGAAGGTGTCTAAGTGTTTTTTTAATACTTCTTTGGGGCA
GTTTGTCAAATATCTTATTGGTCTGGGAAGGGTGTTGAATAATCGAGGGC
CTTCTTGGGAAAGACTTCCCctccagatatttttgtgtttgatattgaca
gcttttagaTTGCAAATGCTCCCCAACCTCTGATTTATGTGGCAGGAAAT
GCCTCCTTTACTTTCGTCATAATCAAAATTCGGGACGTTGCCTTCAATGA
CGTTCCAGGTATAAATTATTTGATACCGCTCTCTCCGTCTTTCAAGGCTA
TACAGttttaatgatttgagtttttccCAATAATTGAGATGTCTGAGGAA
TGGAATTCCATGTAAAAATGATTTCTGGACTTCTTCCAGTTGCTGGACAA
GACCACCCTTCCAGGGAGACCAGAGTTGAGAGCAGTAGTCCAAATGAGGG
ATGGCTAGTGCTTTCCATAAAGTTAACATGGTTTCAATTTCCCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044157-exon-sc0005081-1491911889:3596..4960 | TCONS_00044157-exon-sc0005081-1491911889:3596..4960 | Clytia hemisphaerica | exon |
| TCONS_00044157-exon-sc0005081-1510915933:3596..4960 | TCONS_00044157-exon-sc0005081-1510915933:3596..4960 | Clytia hemisphaerica | exon |
| TCONS_00044157-exon-sc0005081-1575043694:3596..4960 | TCONS_00044157-exon-sc0005081-1575043694:3596..4960 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005081 | supercontig | sc0005081:3596..4960 . |
Blast
The following BLAST results are available for this feature:
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