TCONS_00044149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044149
Unique NameTCONS_00044149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length601

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044149 ID=TCONS_00044149|Name=TCONS_00044149|organism=Clytia hemisphaerica|type=transcript|length=601bp
TACAGGACTCCATCGTGACATGTGGACCAATCTTAAAGAAACTGGTATCA
AGGGTATGACGTCACTCAAATCGTTCCCAGATACGCCGTCTGTTTCCTTG
ACAACACAACGCTTCTCTACACCACGTGACACCGGTATGAAATATGGTCA
GCGGTTATATGGTTATTTTGTACCACCGGAAACGGGAAATTATATTTTCG
CAGTGTCGTGCACGAACGAATGTAATTTATTGCTGAGTAAATCAGAATTG
GAGGAGAAAAAGGATGTCATCTTAACACGTGATAAATCTGGCCCCGAAGA
TGTGAGTTCAGATGGAATCCAATTGAAAGGAGGCTACACGTATTTTATTG
AAGGGTTATCATATCACGAGAAAGATGACTCTCCGATGAAAGTTGGTGTT
CGTTTACCTTCATCAAAAATACTCGCTCCTATACCCTCAACTATGCTCAA
AACGACAAGAGGAGGTTTAGTAGACGAAGAATTTGACGAATTATCGACAG
CCTCCATTTCAAGTTTATTCAATCGAGCTTCGTTTCCAAACTTCCCAACG
AAATATCAATCACTGGATGATTTCAATTTGATTGAACAAGAGCCGAAGGG
T
Run BLAST on NCBI

protein sequence of TCONS_00044149-protein

>TCONS_00044149-protein ID=TCONS_00044149-protein|Name=TCONS_00044149-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
TGLHRDMWTNLKETGIKGMTSLKSFPDTPSVSLTTQRFSTPRDTGMKYGQ
RLYGYFVPPETGNYIFAVSCTNECNLLLSKSELEEKKDVILTRDKSGPED
VSSDGIQLKGGYTYFIEGLSYHEKDDSPMKVGVRLPSSKILAPIPSTMLK
TTRGGLVDEEFDELSTASISSLFNRASFPNFPTKYQSLDDFNLIEQEPKG
Run BLAST on NCBI

transcript from alignment at sc0005069:408..1981-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044149 ID=TCONS_00044149|Name=TCONS_00044149|organism=Clytia hemisphaerica|type=transcript|length=1574bp|location=Sequence derived from alignment at sc0005069:408..1981- (Clytia hemisphaerica)
TACAGGACTCCATCGTGACATGTGGACCAATCTTAAAGAAACTGGTATCA
AGGGTATGACGTCACTCAAATCGTTCCCAGATACGCCGTCTGTTTCCTTG
ACAACACAACGCTTCTCTACACCACGTGACACCGGTATGAAATATGGTCA
GCGGTTATATGGTTATTTTGTACCACCGGAAACGGGAAATTATATTTTCG
CAGTGTCGTGCACGAACGAATGTAATTTATTGCTGAGTAAATCAGAATTG
GAGGAGAAAAAGGATGTCATCTTAACACGTGATAAATCTGGGTAAGTGAG
AACATTTCTAAAGTGTAGCCAAGTGAAATATAGATTGAATTTGTTGTGAA
TAGTTCTATTTACTCATCTCAGACGATTTTTCCGTCTCGGTTATAAAGGG
GACTAATAAGAATCTTCGACCTTTCGCAAGCAAGAAAATATGATATCTTT
TTTCTTGGAATGATAGATTGGATCTACCGCTTTCTTTGTTTTCACGCAAA
TATTTGATTCGAAATCAAAAGATGTCTTTACTTTTAATCCGGCGTTTGTG
TGAAACCATGCGTGTCGCGGGTTACAGATGAGAAATAAGCCCATATTTAT
AAATATTGTGTCTTAATAGTTTTGATGTTTATCCTGTTTAGCCCCGAAGA
TGTGAGTTCAGATGGAATCCAATTGAAAGGAGGCTACACGTATTTTATTG
AAGGGTTATCATATCACGAGAAAGATGACTCTCCGATGAAAGTTGGTGTT
CGTTTACCTTCATCAAAAATACTCGCTCCTATACCCTCAACTATGCTCAA
AACGACAAGAGGAGGTCAGTCTATAGTTTTCTCATTTATTTTCAATGTTT
GTACAGTGAGTGGAGTTCTTTAACGCGAAACACTATAATTTCCTTAAATC
AAACAAATTTGTGTTTCCTCGACATATCAAAATCCTCAAAAATCTTAACT
TTAGCAGAGTAAATAAAACTGAATCCACATTGATCCATGGCAAAATCAAT
TTTCGGATTAAGTTTTATCTTGTTTTTAAATAAAAAGGAATATCTCCTCT
TTGCTGGGCTTCTTTTTTCCATTGAGCAACAAACCAAATATGGCTTCACC
TAAGGGAAAATGTAAGTCATCGAGCTCTAAAATAAAGACTGCAATGTACA
CAACCATTATCATGTGATACACAGTACAGTTTTCCAGGAAAAATATCCAC
TACTTTGAAATGCGACCGGGACTTTGCTAAGGAGATACATTCCCAATATT
TCTGATCCAAGCTTTAAATCGAATTTCTTTTAACATACTACAGCTTATCA
TACATCATACCTATCACCTCTAGATTAACAATTATCTGCTTATACACTAT
ATTCTTTAAATTTGAATNATCACCTCTAGATTAACAATTATCTGCTTATA
CACTATATTCTTTAAATTTGAATTGCTTTTATCACAGGTTTAGTAGACGA
AGAATTTGACGAATTATCGACAGCCTCCATTTCAAGTTTATTCAATCGAG
CTTCGTTTCCAAACTTCCCAACGAAATATCAATCACTGGATGATTTCAAT
TTGATTGAACAAGAGCCGAAGGGT

Coding sequence (CDS) from alignment at sc0005069:408..1981-

>TCONS_00044149 ID=TCONS_00044149|Name=TCONS_00044149|organism=Clytia hemisphaerica|type=CDS|length=1800bp|location=Sequence derived from alignment at sc0005069:408..1981- (Clytia hemisphaerica)
GTTTAGTAGACGAAGAATTTGACGAATTATCGACAGCCTCCATTTCAAGT
TTATTCAATCGAGCTTCGTTTCCAAACTTCCCAACGAAATATCAATCACT
GGATGATTTCAATTTGATTGAACAAGAGCCGAAGGGTCCCCGAAGATGTG
AGTTCAGATGGAATCCAATTGAAAGGAGGCTACACGTATTTTATTGAAGG
GTTATCATATCACGAGAAAGATGACTCTCCGATGAAAGTTGGTGTTCGTT
TACCTTCATCAAAAATACTCGCTCCTATACCCTCAACTATGCTCAAAACG
ACAAGAGGAGACAGGACTCCATCGTGACATGTGGACCAATCTTAAAGAAA
CTGGTATCAAGGGTATGACGTCACTCAAATCGTTCCCAGATACGCCGTCT
GTTTCCTTGACAACACAACGCTTCTCTACACCACGTGACACCGGTATGAA
ATATGGTCAGCGGTTATATGGTTATTTTGTACCACCGGAAACGGGAAATT
ATATTTTCGCAGTGTCGTGCACGAACGAATGTAATTTATTGCTGAGTAAA
TCAGAATTGGAGGAGAAAAAGGATGTCATCTTAACACGTGATAAATCTGG
GTTTAGTAGACGAAGAATTTGACGAATTATCGACAGCCTCCATTTCAAGT
TTATTCAATCGAGCTTCGTTTCCAAACTTCCCAACGAAATATCAATCACT
GGATGATTTCAATTTGATTGAACAAGAGCCGAAGGGTCCCCGAAGATGTG
AGTTCAGATGGAATCCAATTGAAAGGAGGCTACACGTATTTTATTGAAGG
GTTATCATATCACGAGAAAGATGACTCTCCGATGAAAGTTGGTGTTCGTT
TACCTTCATCAAAAATACTCGCTCCTATACCCTCAACTATGCTCAAAACG
ACAAGAGGAGACAGGACTCCATCGTGACATGTGGACCAATCTTAAAGAAA
CTGGTATCAAGGGTATGACGTCACTCAAATCGTTCCCAGATACGCCGTCT
GTTTCCTTGACAACACAACGCTTCTCTACACCACGTGACACCGGTATGAA
ATATGGTCAGCGGTTATATGGTTATTTTGTACCACCGGAAACGGGAAATT
ATATTTTCGCAGTGTCGTGCACGAACGAATGTAATTTATTGCTGAGTAAA
TCAGAATTGGAGGAGAAAAAGGATGTCATCTTAACACGTGATAAATCTGG
GTTTAGTAGACGAAGAATTTGACGAATTATCGACAGCCTCCATTTCAAGT
TTATTCAATCGAGCTTCGTTTCCAAACTTCCCAACGAAATATCAATCACT
GGATGATTTCAATTTGATTGAACAAGAGCCGAAGGGTCCCCGAAGATGTG
AGTTCAGATGGAATCCAATTGAAAGGAGGCTACACGTATTTTATTGAAGG
GTTATCATATCACGAGAAAGATGACTCTCCGATGAAAGTTGGTGTTCGTT
TACCTTCATCAAAAATACTCGCTCCTATACCCTCAACTATGCTCAAAACG
ACAAGAGGAGACAGGACTCCATCGTGACATGTGGACCAATCTTAAAGAAA
CTGGTATCAAGGGTATGACGTCACTCAAATCGTTCCCAGATACGCCGTCT
GTTTCCTTGACAACACAACGCTTCTCTACACCACGTGACACCGGTATGAA
ATATGGTCAGCGGTTATATGGTTATTTTGTACCACCGGAAACGGGAAATT
ATATTTTCGCAGTGTCGTGCACGAACGAATGTAATTTATTGCTGAGTAAA
TCAGAATTGGAGGAGAAAAAGGATGTCATCTTAACACGTGATAAATCTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027796XLOC_027796Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044149-proteinTCONS_00044149-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044149-exon-sc0005069-1575043694:1691..1981TCONS_00044149-exon-sc0005069-1575043694:1691..1981Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1575043694:1168..1340TCONS_00044149-exon-sc0005069-1575043694:1168..1340Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1575043694:408..544TCONS_00044149-exon-sc0005069-1575043694:408..544Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1510915933:1691..1981TCONS_00044149-exon-sc0005069-1510915933:1691..1981Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1510915933:1168..1340TCONS_00044149-exon-sc0005069-1510915933:1168..1340Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1510915933:408..544TCONS_00044149-exon-sc0005069-1510915933:408..544Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1491911889:1691..1981TCONS_00044149-exon-sc0005069-1491911889:1691..1981Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1491911889:1168..1340TCONS_00044149-exon-sc0005069-1491911889:1168..1340Clytia hemisphaericaexon
TCONS_00044149-exon-sc0005069-1491911889:408..544TCONS_00044149-exon-sc0005069-1491911889:408..544Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005069supercontigsc0005069:408..1981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0905044	0	0.102474	0	0.505625	0.34277	8.2683	9.20982	2.41426	2.29127	6.13258	3.33726	8.36038	7.13887	4.43554	16.6881	8.37811	8.49141	0.0962082	0	7.59748	7.10152	3.39287	3.80145	8.35065	11.0806	0.748338	0.570079	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011658PA14_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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