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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044142 ID=TCONS_00044142|Name=TCONS_00044142|organism=Clytia hemisphaerica|type=transcript|length=1014bp
AGTACACGTCCACAGAGTTCAATCGATACTGCAAAGACAAAGGGATTCAA
CGTGAGTTTACAATCCCTTATTCTCCACAACAAAATGGTGTTTCAGAGAG
GATGAACCGTACTATCCTCGACCTCGCAAGATCAATGCTTCATCAAAGCA
ACCTTGGATTAGAATTCTGGGCTGAAGCCGTCGCAACTGCTGTCTACATT
CGAAATCGCAGTCCGACATCGAAGCTGAAAGATCAAACGCCTTTCGAATG
CTGGTTCGAGAAGAAGCCTGTTGTTAGTCATCTACGTGTATTTGGATGTA
AAGCTATGGTTCACGTTCCGTCTGAGAAGCAGAAGAGTAAGCTTGACAAA
CGTTCCATACCGTGTATCTTTGTTGGTTATCCAAATGACAGCAAAGGATA
CAAATTGTTCAATCCTGAAACCGGAAAGATGATCCGTAGTAATGATGTCC
TGTTCTTCGAAAAGGATTTTCCACTCGTTACCGGAAATTCTAAGGAAGAG
GACATAGTTGATGAACAATGCCAGTTTTATTTCGATAATGACATTGTTCC
TGAAGTCGCTCCTGTAGTCGTGCAAGAGGCTGTACCGGAAGCTGTACCAG
AAGTCGTTCCTGATCAAGCTGTTCAAGGAGAACCTGTCGAGGTTCCTTAA
CGTGCCCAACGTGATCGCAAGGCACCTGATCGCTTAGGTGTCATCACTGG
CAATTGGTGGGAATTGGCGAATGTTGCTGTTGATTCCAATGAGCCCCAGA
CCTACACACAAGCGATAACCTGTGAGAAAGCTGAATACTGGCGGAAAGCT
ATTAATGATGAAATGAATTCGCTAGTTGCAAACCATACATGGGACTTAGT
TGATTTACCTGAAGGCAAAAATGTTGTCGGTAGTCGATGGGTCTTCAAAG
AGAAACGAGGTGCAGATGGCGAGATTACGAAATACAAAGCTCGTGTCGTC
GCCCAAGGTTATTCTCAAGAGAAAGGGAATGACTATGATGAAACCTTCGC
CCCAGTCGCAAAGT Run BLAST on NCBI protein sequence of TCONS_00044142-protein >TCONS_00044142-protein ID=TCONS_00044142-protein|Name=TCONS_00044142-protein|organism=Clytia hemisphaerica|type=polypeptide|length=215bp
YTSTEFNRYCKDKGIQREFTIPYSPQQNGVSERMNRTILDLARSMLHQSN
LGLEFWAEAVATAVYIRNRSPTSKLKDQTPFECWFEKKPVVSHLRVFGCK
AMVHVPSEKQKSKLDKRSIPCIFVGYPNDSKGYKLFNPETGKMIRSNDVL
FFEKDFPLVTGNSKEEDIVDEQCQFYFDNDIVPEVAPVVVQEAVPEAVPE
VVPDQAVQGEPVEVP Run BLAST on NCBI transcript from alignment at sc0005061:384..1397 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044142 ID=TCONS_00044142|Name=TCONS_00044142|organism=Clytia hemisphaerica|type=transcript|length=1014bp|location=Sequence derived from alignment at sc0005061:384..1397 (Clytia hemisphaerica)
ACTTTGCGACTGGGGCGAAGGTTTCATCATAGTCATTCCCTTTCTCTTGA
GAATAACCTTGGGCGACGACACGAGCTTTGTATTTCGTAATCTCGCCATC
TGCACCTCGTTTCTCTTTGAAGACCCATCGACTACCGACAACATTTTTGC
CTTCAGGTAAATCAACTAAGTCCCATGTATGGTTTGCAACTAGCGAATTC
ATTTCATCATTAATAGCTTTCCGCCAGTATTCAGCTTTCTCACAGGTTAT
CGCTTGTGTGTAGGTCTGGGGCTCATTGGAATCAACAGCAACATTCGCCA
ATTCCCACCAATTGCCAGTGATGACACCTAAGCGATCAGGTGCCTTGCGA
TCACGTTGGGCACGTTAAGGAACCTCGACAGGTTCTCCTTGAACAGCTTG
ATCAGGAACGACTTCTGGTACAGCTTCCGGTACAGCCTCTTGCACGACTA
CAGGAGCGACTTCAGGAACAATGTCATTATCGAAATAAAACTGGCATTGT
TCATCAACTATGTCCTCTTCCTTAGAATTTCCGGTAACGAGTGGAAAATC
CTTTTCGAAGAACAGGACATCATTACTACGGATCATCTTTCCGGTTTCAG
GATTGAACAATTTGTATCCTTTGCTGTCATTTGGATAACCAACAAAGATA
CACGGTATGGAACGTTTGTCAAGCTTACTCTTCTGCTTCTCAGACGGAAC
GTGAACCATAGCTTTACATCCAAATACACGTAGATGACTAACAACAGGCT
TCTTCTCGAACCAGCATTCGAAAGGCGTTTGATCTTTCAGCTTCGATGTC
GGACTGCGATTTCGAATGTAGACAGCAGTTGCGACGGCTTCAGCCCAGAA
TTCTAATCCAAGGTTGCTTTGATGAAGCATTGATCTTGCGAGGTCGAGGA
TAGTACGGTTCATCCTCTCTGAAACACCATTTTGTTGTGGAGAATAAGGG
ATTGTAAACTCACGTTGAATCCCTTTGTCTTTGCAGTATCGATTGAACTC
TGTGGACGTGTACT Coding sequence (CDS) from alignment at sc0005061:384..1397 >TCONS_00044142 ID=TCONS_00044142|Name=TCONS_00044142|organism=Clytia hemisphaerica|type=CDS|length=648bp|location=Sequence derived from alignment at sc0005061:384..1397 (Clytia hemisphaerica)
TTAAGGAACCTCGACAGGTTCTCCTTGAACAGCTTGATCAGGAACGACTT
CTGGTACAGCTTCCGGTACAGCCTCTTGCACGACTACAGGAGCGACTTCA
GGAACAATGTCATTATCGAAATAAAACTGGCATTGTTCATCAACTATGTC
CTCTTCCTTAGAATTTCCGGTAACGAGTGGAAAATCCTTTTCGAAGAACA
GGACATCATTACTACGGATCATCTTTCCGGTTTCAGGATTGAACAATTTG
TATCCTTTGCTGTCATTTGGATAACCAACAAAGATACACGGTATGGAACG
TTTGTCAAGCTTACTCTTCTGCTTCTCAGACGGAACGTGAACCATAGCTT
TACATCCAAATACACGTAGATGACTAACAACAGGCTTCTTCTCGAACCAG
CATTCGAAAGGCGTTTGATCTTTCAGCTTCGATGTCGGACTGCGATTTCG
AATGTAGACAGCAGTTGCGACGGCTTCAGCCCAGAATTCTAATCCAAGGT
TGCTTTGATGAAGCATTGATCTTGCGAGGTCGAGGATAGTACGGTTCATC
CTCTCTGAAACACCATTTTGTTGTGGAGAATAAGGGATTGTAAACTCACG
TTGAATCCCTTTGTCTTTGCAGTATCGATTGAACTCTGTGGACGTGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044142-exon-sc0005061-1491911889:384..1397 | TCONS_00044142-exon-sc0005061-1491911889:384..1397 | Clytia hemisphaerica | exon |
| TCONS_00044142-exon-sc0005061-1510915933:384..1397 | TCONS_00044142-exon-sc0005061-1510915933:384..1397 | Clytia hemisphaerica | exon |
| TCONS_00044142-exon-sc0005061-1575043694:384..1397 | TCONS_00044142-exon-sc0005061-1575043694:384..1397 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005061 | supercontig | sc0005061:384..1397 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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