TCONS_00044141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044141
Unique NameTCONS_00044141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2609

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044141 ID=TCONS_00044141|Name=TCONS_00044141|organism=Clytia hemisphaerica|type=transcript|length=2609bp
AAACTTTGGTGCTGTTTGGCTTTCTACTAGTGTATTAAACAACCCTGGTC
TGGAGACTGGTCTTTTTcataaacatgttttttttattgccAAATTTCCA
ACGTTTCTCagaaaaaatctgtaaaaatatttacacTTAAGGTGTATAAG
TCGATTCCCTGTACTGTATGTTTATTAGAGACATTCTTATAAACTATATA
ATATGTAAGTAAGTTTGCGGTCGTAGTTGGAGGTGACCCGGATGCTCCTc
gttcgatagctatctacccaaaggtaggggatGGTGTCACTTTTTTCCCT
GGATTGCTCGACTTACCCTTGAGCCTTCTCTTAACTgcttgctgagcatc
aagcagagaggcatcaagtaccatttttagaatctttggtggtatgaccc
ggcttgggtcgaacccacaaccgtagctggatgctctaccactgaacTAC
GATTGCTATAATATATAGCCTTTTTGTTGATGTTCATTCTAGATAAGGGC
TACTTCGACTTAGACTACTCAATATATTCAGCAATATATCGTCAATATTG
CCTGACACCCTGACAGTATATATGTTGTGATTTGTCTTGTCTTTTTGTTT
CTATGACTCCATTTTAAATAGTTAGAGGTTTCATACTTGACTACAGAATA
TATTATAAATTTAGCTAGATTTAAAACTTGATTTGTTTTAACTCTTTCTC
AAGATCGCCCCTGCAAGATCGTTGAGATGTCCACCTCAAAGACGGGAAAA
CACGGTCACGCTAAAGTTCATATGGTCGCTCTTGATATATTTACCGGTAA
AAAAATGGAAGATATCTGTCCCTCCACACACAACATGAATGTTCCAAATG
TTGGCAGAAAAGACTACCAATTTTTAAATATCGATGACGAATTTGTTTCA
ATGATGGACGACGGCGGTGAAACGAAAGAAGACTTGAAATTACCCAATGA
TGATATCGGTAAGGAAATCCGGGAAAAAGAAGCTAACGGAGAGTCATTCA
TCGTCACCGTATTGAGTGCTTGTGGCGAGGAGAAAATCGTGGGAACCAAA
GTGATGAACTAAAGTATTCCGGCCGCCGAGAGTTCTTcgctggttttttt
ttttttatccaaACTCAGAAAACGACAACCATCAATTTTATAAATATGAA
AATACAAATAATTTTCGTAAATACACACATACACAGTGATTTTTCTTGAT
CCCTTACTGATGTATTGTGCCCGTTTTCTTAGAATTCTTGCCTTTTTGGT
TTCTAAGTTTTCTCCGCATGATTATATTCTACTGTCATTAAAATTAAGAG
GTTTACTTTTGGCCGCTGTTGTAGTCTGGGCTTTATCCTAATGCCAGAGA
CTTTTTAAATGGTTGAGATTGGCTCAAATTCAAACCACTGTTCATAGACT
GTCTGCATCTACTCTTACGTTTTGACATagtggtttcaattttcttaagt
tAAAAAATCCGATGAATTATTAAACTCTTAGtaggggaaatttgtaaaat
cgctcgattttttttggtcaaagcacttgttatacatttttggaaagcta
aaggGTAGGggaattaaaataacttgagtGCCAATtctttttcggacact
ttggtgtgattttcggacagaTATGACAGTCTCAAGCAAAAATTATTAGG
GTAtctaaaaaattaatgaaaattttagcttgagaaaatagacctgttgt
atatttttggaaagctctcaagaaattaagattagtgattatattgcgag
tataggtgattatGGTAcctttttttgcatcgaacgttttaattgcattc
gaaatttattttgtgagaaagaaaatcaataaacaacaataaaagaaaga
cataaagagaagagaaaaatatataactcttcgtgtaatttactttccta
actgggaaaatgTAGTTgtgccattgtgcgattagctcgtaatcacatac
atgttttttttttataagaataacgcttataagcatatgaaggctcagat
ctgcagaattcctaagcataacatgagcatatatgtcagcctaaaatatt
tttcaagtggtcatttttatctgtttttgtttcatttttatctggtttgg
tagaggtcaagtaaaaaataagacattccacagctagctacattccactg
ctcccaaaatctgaacaaattttttacaaaatttctgaaattttatttaa
aaacttggctcggggtgaatcataagcatataacagggttcagacagacc
ctggaaaacctggaaatatgataaattttcagaaaaatcagggaaaccca
gggaaaatttttttttccagtctgctcagggaaactcagggaattttcTT
TTTTGAAGAATGAATGGAAAAAACAGATTTAAAAGTTtttttagttttaa
agtgtTTATTCATATGCAGTATTTGTAGCTTTAATTTTTACCTTAGGTTT
ACCATTTGATTTGTGTGCCTTTTGTTTAAAGATACATCTCTTTTTACTCT
Gcttagtttttatggtttgcttgatactcagggaaaaaacctttgaaaat
tgattaaaattcagggaaactcagggaattttattttcgaaggtctgtct
gaaccctgt
Run BLAST on NCBI

protein sequence of TCONS_00044141-protein

>TCONS_00044141-protein ID=TCONS_00044141-protein|Name=TCONS_00044141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=111bp
MSTSKTGKHGHAKVHMVALDIFTGKKMEDICPSTHNMNVPNVGRKDYQFL
NIDDEFVSMMDDGGETKEDLKLPNDDIGKEIREKEANGESFIVTVLSACG
EEKIVGTKVMN
Run BLAST on NCBI

transcript from alignment at sc0005059:1017..5014-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044141 ID=TCONS_00044141|Name=TCONS_00044141|organism=Clytia hemisphaerica|type=transcript|length=3998bp|location=Sequence derived from alignment at sc0005059:1017..5014- (Clytia hemisphaerica)
AAACTTTGGTGCTGTTTGGCTTTCTACTAGTGTATTAAACAACCCTGGTC
TGGAGACTGGTCTTTTTCATAAACATGTTTTTTTTATTGCCAAATTTCCA
ACGTTTCTCAGAAAAAATCTGTAAAAATATTTACACTTAAGGTGTATAAG
TCGATTCCCTGTACTGTATGTTTATTAGAGACATTCTTATAAACTATATA
ATATGTAAGTAAGTTTGCGGTCGTAGTTGGAGGTGACCCGGATGCTCCTC
GTTCGATAGCTATCTACCCAAAGGTAGGGGATGGTGTCACTTTTTTCCCT
GGATTGCTCGACTTACCCTTGAGCCTTCTCTTAACTGCTTGCTGAGCATC
AAGCAGAGAGGCATCAAGTACCATTTTTAGAATCTTTGGTGGTATGACCC
GGCTTGGGTCGAACCCACAACCGTAGCTGGATGCTCTACCACTGAACTAC
GATTGCTATAATATATAGCCTTTTTGTTGATGTTCATTCTAGATAAGGGC
TACTTCGACTTAGACTACTCAATATATTCAGCAATATATCGTCAATATTG
CCTGACACCCTGACAGTATATATGTTGTGATTTGTCTTGTCTTTTTGTTT
CTATGACTCCATTTTAAATAGTTAGAGGTTTCATACTTGACTACAGAATA
TATTATAAATTTAGCTAGATTTAAAACTTGATTTGTTTTAACTCTTTCTC
AAGATCGCCCCTGCAAGATCGTTGAGATGTCCACCTCAAAGACGGGAAAA
CACGGTCACGCTAAAGTTCATATGGTCGCTCTTGATATATTTACCGGTAA
AAAAATGGAAGATATCTGTCCCTCCACACACAACATGAATGTTCCAAATG
TTGGCAGAAAAGACTACCAAGTAAGTTTCCCTTATGAAGACGGATAAAAT
TAGTGTGAAACATGCTTGCAGACCAAAGATTGCTTCTTGTAAACTCTTGT
CAAAGTCTTTCGATCAGGGGGGGGGTCGGTACTAAAATTTCAGACATNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNCCCCCCCCCTCCCTGGACTAACAAGTGCTTGAAATAA
AAATAAAAATTTTCAATTTTGGACGTCTGTTTGATATAGATATATATTAG
AAATAGGGGTTTTGGCCATTTCGTGCGAACAAATTTGTCTGCTAATCAGA
GGGTCGGCTAATTGAGTGTCCGCCTTTTAGAAACTTTTTTATGAGGATTT
GACTAGGAAACAGCCGGGGAAATGAAATTGCCCGCTAATCAGAGGTGTCC
GCCATTAAGAGTGTCCGTTAATTAGAGGTTTTACTGTATTGATTGATTTA
ATCTTTTAGTTTTTAAATATCGATGACGAATTTGTTTCAATGATGGACGA
CGGCGGTGAAACGAAAGAAGACTTGAAATTACCCAATGATGATATCGGTA
AGGAAATCCGGGAAAAAGAAGCTAACGGAGAGTCATTCATCGTCACCGTA
TTGAGTGCTTGTGGCGAGGAGAAAATCGTGGGAACCAAAGTGATGAACTA
AAGTATTCCGGCCGCCGAGAGTTCTTCGCTGGTTTTTTTTTTTTTATCCA
AACTCAGAAAACGACAACCATCAATTTTATAAATATGAAAATACAAATAA
TTTTCGTAAATACACACATACACAGTGATTTTTCTTGATCCCTTACTGAT
GTATTGTGCCCGTTTTCTTAGAATTCTTGCCTTTTTGGTTTCTAAGTTTT
CTCCGCATGATTATATTCTACTGTCATTAAAATTAAGAGGTTTACTTTTG
GCCGCTGTTGTAGTCTGGGCTTTATCCTAATGCCAGAGACTTTTTAAATG
GTTGAGATTGGCTCAAATTCAAACCACTGTTCATAGACTGTCTGCATCTA
CTCTTACGTTTTGACATAGTGGTTTCAATTTTCTTAAGTTAAAAAATCCG
ATGAATTATTAAACTCTTAGTAGGGGAAATTTGTAAAATCGCTCGATTTT
TTTTGGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAAGGGTAGGGG
AATTAAAATAACTTGAGTGCCAATTCTTTTTCGGACACTTTGGTGTGATT
TTCGGACAGATATGACAGTCTCAAGCAAAAATTATTAGGGTATCTAAAAA
ATTAATGAAAATTTTAGCTTGAGAAAATAGACCTGTTGTATATTTTTGGA
AAGCTCTCAAGAAATTAAGATTAGTGATTATATTGCGAGTATAGGTGATT
ATGGTACCTTTTTTTGCATCGAACGTTTTAATTGCATTCGAAATTTATTT
TGTGAGAAAGAAAATCAATAAACAACAATAAAAGAAAGACATAAAGAGAA
GAGAAAAATATATAACTCTTCGTGTAATTTACTTTCCTAACTGGGAAAAT
GTAGTTGTGCCATTGTGCGATTAGCTCGTAATCACATACATGTTTTTTTT
TTATAAGAATAACGCTTATAAGCATATGAAGGCTCAGATCTGCAGAATTC
CTAAGCATAACATGAGCATATATGTCAGCCTAAAATATTTTTCAAGTGGT
CATTTTTATCTGTTTTTGTTTCATTTTTATCTGGTTTGGTAGAGGTCAAG
TAAAAAATAAGACATTCCACAGCTAGCTACATTCCACTGCTCCCAAAATC
TGAACAAATTTTTTACAAAATTTCTGAAATTTTATTTAAAAACTTGGCTC
GGGGTGAATCATAAGCATATAACAGGGTTCAGACAGACCCTGGAAAACCT
GGAAATATGATAAATTTTCAGAAAAATCAGGGAAACCCAGGGAAAATTTT
TTTTTCCAGTCTGCTCAGGGAAACTCAGGGAATTTTCTTTTTTGAAGAAT
GAATGGAAAAAACAGATTTAAAAGTTTTTTTAGTTTTAAAGTGTTTATTC
ATATGCAGTATTTGTAGCTTTAATTTTTACCTTAGGTTTACCATTTGATT
TGTGTGCCTTTTGTTTAAAGATACATCTCTTTTTACTCTGCTTAGTTTTT
ATGGTTTGCTTGATACTCAGGGAAAAAACCTTTGAAAATTGATTAAAATT
CAGGGAAACTCAGGGAATTTTATTTTCGAAGGTCTGTCTGAACCCTGT

Coding sequence (CDS) from alignment at sc0005059:1017..5014-

>TCONS_00044141 ID=TCONS_00044141|Name=TCONS_00044141|organism=Clytia hemisphaerica|type=CDS|length=672bp|location=Sequence derived from alignment at sc0005059:1017..5014- (Clytia hemisphaerica)
TTTTTAAATATCGATGACGAATTTGTTTCAATGATGGACGACGGCGGTGA
AACGAAAGAAGACTTGAAATTACCCAATGATGATATCGGTAAGGAAATCC
GGGAAAAAGAAGCTAACGGAGAGTCATTCATCGTCACCGTATTGAGTGCT
TGTGGCGAGGAGAAAATCGTGGGAACCAAAGTGATGAACTAAATGTCCAC
CTCAAAGACGGGAAAACACGGTCACGCTAAAGTTCATATGGTCGCTCTTG
ATATATTTACCGGTAAAAAAATGGAAGATATCTGTCCCTCCACACACAAC
ATGAATGTTCCAAATGTTGGCAGAAAAGACTACCAATTTTTAAATATCGA
TGACGAATTTGTTTCAATGATGGACGACGGCGGTGAAACGAAAGAAGACT
TGAAATTACCCAATGATGATATCGGTAAGGAAATCCGGGAAAAAGAAGCT
AACGGAGAGTCATTCATCGTCACCGTATTGAGTGCTTGTGGCGAGGAGAA
AATCGTGGGAACCAAAGTGATGAACTAAATGTCCACCTCAAAGACGGGAA
AACACGGTCACGCTAAAGTTCATATGGTCGCTCTTGATATATTTACCGGT
AAAAAAATGGAAGATATCTGTCCCTCCACACACAACATGAATGTTCCAAA
TGTTGGCAGAAAAGACTACCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027788XLOC_027788Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044141-proteinTCONS_00044141-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044141-exon-sc0005059-1575043694:4145..5014TCONS_00044141-exon-sc0005059-1575043694:4145..5014Clytia hemisphaericaexon
TCONS_00044141-exon-sc0005059-1575043694:1017..2755TCONS_00044141-exon-sc0005059-1575043694:1017..2755Clytia hemisphaericaexon
TCONS_00044141-exon-sc0005059-1510915933:4145..5014TCONS_00044141-exon-sc0005059-1510915933:4145..5014Clytia hemisphaericaexon
TCONS_00044141-exon-sc0005059-1510915933:1017..2755TCONS_00044141-exon-sc0005059-1510915933:1017..2755Clytia hemisphaericaexon
TCONS_00044141-exon-sc0005059-1491911889:4145..5014TCONS_00044141-exon-sc0005059-1491911889:4145..5014Clytia hemisphaericaexon
TCONS_00044141-exon-sc0005059-1491911889:1017..2755TCONS_00044141-exon-sc0005059-1491911889:1017..2755Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005059supercontigsc0005059:1017..5014 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
359.224	381.508	437.629	510.552	344.293	273.827	333.099	348.834	391.738	369.924	403.943	444.315	495.912	504.153	476.75	473.105	424.141	465.922	322.048	350.326	443.003	445.28	406.271	374.452	354.033	360.913	478.742	463.673	290.935	305.421
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020189Transl_elong_IF5A_C
IPR001884Transl_elong_IF5A
IPR014722Rib_L2_dom2
IPR019769Trans_elong_IF5A_hypusine_site
IPR008991Translation_prot_SH3-like
IPR012340NA-bd_OB-fold
Vocabulary: Biological Process
TermDefinition
GO:0045901positive regulation of translational elongation
GO:0045905positive regulation of translational termination
GO:0006452translational frameshifting
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003746translation elongation factor activity
GO:0043022ribosome binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045901 positive regulation of translational elongation
biological_process GO:0045905 positive regulation of translational termination
biological_process GO:0006452 translational frameshifting
molecular_function GO:0043022 ribosome binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0003746 translation elongation factor activity
Blast
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BLAST of TCONS_00044141 vs. Swiss-Prot (Human)
Match: IF5A1 (Eukaryotic translation initiation factor 5A-1 OS=Homo sapiens GN=EIF5A PE=1 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 2.907e-46
Identity = 75/117 (64.10%), Postives = 91/117 (77.78%), Query Frame = 1 
Query:  706 RPCKIVEMSTSKTGKHGHAKVHMVALDIFTGKKMEDICPSTHNMNVPNVGRKDYQFLNIDDEFVSMMDDGGETKEDLKLPNDDIGKEIREKEANGESFIVTVLSACGEEKIVGTKVM 1056
            RPCKIVEMSTSKTGKHGHAKVH+V +DIFTGKK EDICPSTHNM+VPN+ R D+Q + I D ++S++ D GE +EDL+LP  D+GKEI +K   GE  ++TVLSA  EE  V  K M
Sbjct:   36 RPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIKAM 152
The following BLAST results are available for this feature:
BLAST of TCONS_00044141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
IF5A12.907e-4664.10Eukaryotic translation initiation factor 5A-1 OS=H... [more]
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