TCONS_00044139 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044139
Unique NameTCONS_00044139
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length363

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044139 ID=TCONS_00044139|Name=TCONS_00044139|organism=Clytia hemisphaerica|type=transcript|length=363bp
GCAGTTTCATATTATCAAACAACTGATACAGCATCGGCCGCAATTAAATA
TGCTGACAAAGAGATGAGTTATTTCTTGGGACGAAAATTTGATGCAAGTC
ATGTGTTGGTTATTGATTATCACCGTGTTCTTATGCAGACGTCACGGTTA
AAGACAAGATATTCGTTCCAAGTTGGTCTTGTCAGCAATGGAGACGAAAC
CTTTTTAATTTTGCGTTACTTCACAAATATCCAAACTCGCACTGGTGGTG
GATATGAAAGCAAAAATTGTAATTGGGAGAAGTTTTTGACTGTGGACTGG
GGCGACTATGAAATGTATACTTCGAATACTGGTCGTAATGGGATGTTTAT
TTTTAAAGTCTAT
Run BLAST on NCBI

protein sequence of TCONS_00044139-protein

>TCONS_00044139-protein ID=TCONS_00044139-protein|Name=TCONS_00044139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=121bp
AVSYYQTTDTASAAIKYADKEMSYFLGRKFDASHVLVIDYHRVLMQTSRL
KTRYSFQVGLVSNGDETFLILRYFTNIQTRTGGGYESKNCNWEKFLTVDW
GDYEMYTSNTGRNGMFIFKVY
Run BLAST on NCBI

transcript from alignment at sc0005055:3053..4096-

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044139 ID=TCONS_00044139|Name=TCONS_00044139|organism=Clytia hemisphaerica|type=transcript|length=1044bp|location=Sequence derived from alignment at sc0005055:3053..4096- (Clytia hemisphaerica)
GCAGTTTCATATTATCAAACAACTGATACAGCATCGGCCGCAATTAAATA
TGCTGACAAAGAGATGAGTTATTTCTTGGGACGAAAATTTGATGCAAGTC
ATGTGTTGGTTATTGATTATCACCGTGTTCTTATGCAGACGTCACGGTTA
AAGACAAGAGTGAGTATTATCATTTTTTTAATCAATTTTTTCATTATCAA
TAGCGCACCACGCTGAATCTAAAAATAGATTTTATTTTTGACATAATCAT
TACTCTCGATGTGTTTGTATGAGTTCCAATGCCATCCCACCTTTGCGTTA
ATCTCTTTCACACGTTAATTGCATCATTTCACAAAAGATATATACCAACT
TGCACGTGTCTTTAATTCAGCCGCATTGAATTGTGGGATTGCAACTCGTA
CAAATGTCAAAAAAGTGAAAAGTAATAATTATGACATATGTGTTGCGGAA
CGCTATTAAACTCCGGTTAAGGAGTTTCTTAAAATCAGTGTTTTTCATTT
GTGATTGTGCGTAAATCCGATTAATCGCGATAATCGGGTTCGATATCTCA
ATCTTTCCCGTTTGATTTCCCAATTTCGTTTGTGTTTGCGCTCGCACTTA
CTAGGATATAGTCTTTTAAATTTTATGTTAGATATATCAAGAAAGGCTGA
CCACGATAAAGATGTTCGCATAATGGTTCGCTATCAAAAAATGACAATTA
CCANTATATCAAGAAAGGCTGACCACGATAAAGATGTTCGCATAATGGTT
CGCTATCAAAAAATGACAATTACCAGAGTTTGCAGCCGTCGTTACGGCTG
TTTTATTGTTTATTACTATCTGTTTCTTATCTCTTTTCAGTATTCGTTCC
AAGTTGGTCTTGTCAGCAATGGAGACGAAACCTTTTTAATTTTGCGTTAC
TTCACAAATATCCAAACTCGCACTGGTGGTGGATATGAAAGCAAAAATTG
TAATTGGGAGAAGTTTTTGACTGTGGACTGGGGCGACTATGAAATGTATA
CTTCGAATACTGGTCGTAATGGGATGTTTATTTTTAAAGTCTAT

Coding sequence (CDS) from alignment at sc0005055:3053..4096-

>TCONS_00044139 ID=TCONS_00044139|Name=TCONS_00044139|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0005055:3053..4096- (Clytia hemisphaerica)
TATTCGTTCCAAGTTGGTCTTGTCAGCAATGGAGACGAAACCTTTTTAAT
TTTGCGTTACTTCACAAATATCCAAACTCGCACTGGTGGTGGATATGAAA
GCAAAAATTGTAATTGGGAGAAGTTTTTGACTGTGGACTGGGGCGACTAT
GAAATGTATACTTCGAATACTGGTCGTAATGGGATGTTTATTTTTAAAGT
CTATGCAGTTTCATATTATCAAACAACTGATACAGCATCGGCCGCAATTA
AATATGCTGACAAAGAGATGAGTTATTTCTTGGGACGAAAATTTGATGCA
AGTCATGTGTTGGTTATTGATTATCACCGTGTTCTTATGCAGACGTCACG
GTTAAAGACAAGATATTCGTTCCAAGTTGGTCTTGTCAGCAATGGAGACG
AAACCTTTTTAATTTTGCGTTACTTCACAAATATCCAAACTCGCACTGGT
GGTGGATATGAAAGCAAAAATTGTAATTGGGAGAAGTTTTTGACTGTGGA
CTGGGGCGACTATGAAATGTATACTTCGAATACTGGTCGTAATGGGATGT
TTATTTTTAAAGTCTATGCAGTTTCATATTATCAAACAACTGATACAGCA
TCGGCCGCAATTAAATATGCTGACAAAGAGATGAGTTATTTCTTGGGACG
AAAATTTGATGCAAGTCATGTGTTGGTTATTGATTATCACCGTGTTCTTA
TGCAGACGTCACGGTTAAAGACAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_027786XLOC_027786Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044139-proteinTCONS_00044139-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044139-exon-sc0005055-1575043694:3938..4096TCONS_00044139-exon-sc0005055-1575043694:3938..4096Clytia hemisphaericaexon
TCONS_00044139-exon-sc0005055-1575043694:3053..3256TCONS_00044139-exon-sc0005055-1575043694:3053..3256Clytia hemisphaericaexon
TCONS_00044139-exon-sc0005055-1510915933:3938..4096TCONS_00044139-exon-sc0005055-1510915933:3938..4096Clytia hemisphaericaexon
TCONS_00044139-exon-sc0005055-1510915933:3053..3256TCONS_00044139-exon-sc0005055-1510915933:3053..3256Clytia hemisphaericaexon
TCONS_00044139-exon-sc0005055-1491911889:3938..4096TCONS_00044139-exon-sc0005055-1491911889:3938..4096Clytia hemisphaericaexon
TCONS_00044139-exon-sc0005055-1491911889:3053..3256TCONS_00044139-exon-sc0005055-1491911889:3053..3256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005055supercontigsc0005055:3053..4096 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.05595	3.76604	0	0.0777693	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044139 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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