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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044131 ID=TCONS_00044131|Name=TCONS_00044131|organism=Clytia hemisphaerica|type=transcript|length=672bp
TCCAACTCCGAGAATCCCCACTCCGAGAATTCCAGTTCCAAGAATTCCAG
TTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCA
AGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCTCTTCCACGAAT
TCCGGCACCAAGACTTCCTTTACCGACGCCTGAGGGTACTCTGAAGGGTG
GTATTCGAGTGGTCAAGCAAACAGGAGAAGTTGTTGGAGGAAAATTCAAA
GGTGTCACACAAGTTGTCAAGAAGATTGAAGGTGGATTCAAACAAATCAA
TTGGAACAAAGTTGGCAATCAACTTGGAAACTTTGCCAAGGAAACTTTCA
AGTTCATGAATTGTGCCATCCCTGGATTAAGTAGTCTTCTTTCTGGATGT
TTGAAAGATTTGACAGACAGTGCAAAATCGTGTTTGAGCAACAGTCAACC
ATGTCATATCCGATTCGGTGGAACGAACTCACAATGTCTCCGACTGAGCA
AAAATTTCCCtttcaacaaaaaattcttGAGTGgTCATCTCGAGATCTCA
GGTAGCAACAATGCTCAACTTGGAATGGGGATGAAAGCTTACTTCAACAG
CGGGAAAATCCAAATCACTTTCTACGGTTCTGTATCCGTGAAACCCACCA
TCAAATTGACATACCAAAAGTA Run BLAST on NCBI protein sequence of TCONS_00044131-protein >TCONS_00044131-protein ID=TCONS_00044131-protein|Name=TCONS_00044131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
PTPRIPTPRIPVPRIPVPRIPVPRIPVPRIPVPRIPVPRIPVPRIPLPRI
PAPRLPLPTPEGTLKGGIRVVKQTGEVVGGKFKGVTQVVKKIEGGFKQIN
WNKVGNQLGNFAKETFKFMNCAIPGLSSLLSGCLKDLTDSAKSCLSNSQP
CHIRFGGTNSQCLRLSKNFPFNKKFLSGHLEISGSNNAQLGMGMKAYFNS
GKIQITFYGSVSVKPTIKLTYQK Run BLAST on NCBI transcript from alignment at sc0005031:3548..5047- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044131 ID=TCONS_00044131|Name=TCONS_00044131|organism=Clytia hemisphaerica|type=transcript|length=1500bp|location=Sequence derived from alignment at sc0005031:3548..5047- (Clytia hemisphaerica)
TCCAACTCCGAGAATCCCCACTCCGAGAATTCCAGTTCCAAGAATTCCAG
TTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCA
AGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCTCTTCCACGAAT
TCCGGCACCAAGACTTCCTTTACCGACGCCTGAGGGTACTCTGAAGGGTG
GTATTCGAGTGGTCAAGCAAACAGGAGAAGTTGTTGGAGGAAAATTCAAA
GGTGTCACACAAGTTGTCAAGAAGATTGAAGGTGGATTCAAACAAATCAG
TAAGGAATGTTTAATCTTATACATCCAAACCCGAGTGACTGTAAAGCTCA
TTTTACTGCACTGAATACATACTTAACTGCTGATGGTAGCACATATTTTC
ATAGCTGAGAAACAAAGCTTTCCAACCGTTTTTCAGCGATATTGTTGATA
TACCCTGTTCAAAATTCATCCTAAATGCTTACAGTTTCTCAAAAGAAAAC
TGGATATCTTTTTCAGATAATGCTTCTCAAATGCACTTATTGGTGGTTAC
TAGAAGGACAATTTCCATTCCCCCAGCCAACTACTCGCCACTTTGTTTAC
ATTTCTTTCTAAACCAGTTTTGAAGCAAGTATTTTATTCTCATTTTTACT
ATCATAGATTGGAACAAAGTTGGCAATCAACTTGGAAACTTTGCCAAGGA
AACTTTCAAGTTCATGAATTGTGCCATCCCTGGATTAAGTAGTCTTCTTT
CTGGATGTTTGAAAGATTTGACAGACAGTGCAAAATCGTGTTTGAGCAAC
AGTCAACCATGTCATATCCGATTCGGTGGAACGAACTCACAATGTCTCCG
ACTGAGCAAAAATTTCCCTTTCAACAAAAAATTCTTGAGTGGTAAGTTTG
AAACTCTTAAGAAAAGTAAGATTCCCCCGTGTCAAAGATCACATATCAAA
TCCTTCTTAAATTGGCCAACTGTTCTCTCTTTCCCCTTGTGAAAATAATG
TCCGAAAAATAAACTTGAAGCCTCTTCCTCTTGTAACAATACCAACATTT
TGAACATTTTACTAATATTTTCAGTGGATTTTTTTTGAGTAGAAAACAAT
AACATTTAAAATCCCCGGTATTCTCATCGCACTATCGTTATTTTATCCCG
GATAAATGACTTAAAATTTACCTAAGCTACTAATAAAATAGAGCTGTGAA
ATAATTACAACGAACAAGTTTCTATATCTTTGTCATAAGCTAAACTGTTG
TTTGATGACGGGAAATTCTAGGGAAATTTTCTGAACCATTCCAACTCGTC
AGGTTTTCTTCTTCTTTCTTCATCCAGCTAATGTGGATCGGTTTTTCATT
TCTTTCAACAGGTCATCTCGAGATCTCAGGTAGCAACAATGCTCAACTTG
GAATGGGGATGAAAGCTTACTTCAACAGCGGGAAAATCCAAATCACTTTC
TACGGTTCTGTATCCGTGAAACCCACCATCAAATTGACATACCAAAAGTA
Coding sequence (CDS) from alignment at sc0005031:3548..5047- >TCONS_00044131 ID=TCONS_00044131|Name=TCONS_00044131|organism=Clytia hemisphaerica|type=CDS|length=2007bp|location=Sequence derived from alignment at sc0005031:3548..5047- (Clytia hemisphaerica)
GTCATCTCGAGATCTCAGGTAGCAACAATGCTCAACTTGGAATGGGGATG
AAAGCTTACTTCAACAGCGGGAAAATCCAAATCACTTTCTACGGTTCTGT
ATCCGTGAAACCCACCATCAAATTGACATACCAAAAGATTGGAACAAAGT
TGGCAATCAACTTGGAAACTTTGCCAAGGAAACTTTCAAGTTCATGAATT
GTGCCATCCCTGGATTAAGTAGTCTTCTTTCTGGATGTTTGAAAGATTTG
ACAGACAGTGCAAAATCGTGTTTGAGCAACAGTCAACCATGTCATATCCG
ATTCGGTGGAACGAACTCACAATGTCTCCGACTGAGCAAAAATTTCCCTT
TCAACAAAAAATTCTTGAGTGCCAACTCCGAGAATCCCCACTCCGAGAAT
TCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAG
TTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCA
AGAATTCCTCTTCCACGAATTCCGGCACCAAGACTTCCTTTACCGACGCC
TGAGGGTACTCTGAAGGGTGGTATTCGAGTGGTCAAGCAAACAGGAGAAG
TTGTTGGAGGAAAATTCAAAGGTGTCACACAAGTTGTCAAGAAGATTGAA
GGTGGATTCAAACAAATCAGTCATCTCGAGATCTCAGGTAGCAACAATGC
TCAACTTGGAATGGGGATGAAAGCTTACTTCAACAGCGGGAAAATCCAAA
TCACTTTCTACGGTTCTGTATCCGTGAAACCCACCATCAAATTGACATAC
CAAAAGATTGGAACAAAGTTGGCAATCAACTTGGAAACTTTGCCAAGGAA
ACTTTCAAGTTCATGAATTGTGCCATCCCTGGATTAAGTAGTCTTCTTTC
TGGATGTTTGAAAGATTTGACAGACAGTGCAAAATCGTGTTTGAGCAACA
GTCAACCATGTCATATCCGATTCGGTGGAACGAACTCACAATGTCTCCGA
CTGAGCAAAAATTTCCCTTTCAACAAAAAATTCTTGAGTGCCAACTCCGA
GAATCCCCACTCCGAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATT
CCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGT
TCCAAGAATTCCAGTTCCAAGAATTCCTCTTCCACGAATTCCGGCACCAA
GACTTCCTTTACCGACGCCTGAGGGTACTCTGAAGGGTGGTATTCGAGTG
GTCAAGCAAACAGGAGAAGTTGTTGGAGGAAAATTCAAAGGTGTCACACA
AGTTGTCAAGAAGATTGAAGGTGGATTCAAACAAATCAGTCATCTCGAGA
TCTCAGGTAGCAACAATGCTCAACTTGGAATGGGGATGAAAGCTTACTTC
AACAGCGGGAAAATCCAAATCACTTTCTACGGTTCTGTATCCGTGAAACC
CACCATCAAATTGACATACCAAAAGATTGGAACAAAGTTGGCAATCAACT
TGGAAACTTTGCCAAGGAAACTTTCAAGTTCATGAATTGTGCCATCCCTG
GATTAAGTAGTCTTCTTTCTGGATGTTTGAAAGATTTGACAGACAGTGCA
AAATCGTGTTTGAGCAACAGTCAACCATGTCATATCCGATTCGGTGGAAC
GAACTCACAATGTCTCCGACTGAGCAAAAATTTCCCTTTCAACAAAAAAT
TCTTGAGTGCCAACTCCGAGAATCCCCACTCCGAGAATTCCAGTTCCAAG
AATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTC
CAGTTCCAAGAATTCCAGTTCCAAGAATTCCAGTTCCAAGAATTCCTCTT
CCACGAATTCCGGCACCAAGACTTCCTTTACCGACGCCTGAGGGTACTCT
GAAGGGTGGTATTCGAGTGGTCAAGCAAACAGGAGAAGTTGTTGGAGGAA
AATTCAAAGGTGTCACACAAGTTGTCAAGAAGATTGAAGGTGGATTCAAA
CAAATCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00044131-exon-sc0005031-1575043694:4749..5047 | TCONS_00044131-exon-sc0005031-1575043694:4749..5047 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1575043694:4157..4390 | TCONS_00044131-exon-sc0005031-1575043694:4157..4390 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1575043694:3548..3686 | TCONS_00044131-exon-sc0005031-1575043694:3548..3686 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1510915933:4749..5047 | TCONS_00044131-exon-sc0005031-1510915933:4749..5047 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1510915933:4157..4390 | TCONS_00044131-exon-sc0005031-1510915933:4157..4390 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1510915933:3548..3686 | TCONS_00044131-exon-sc0005031-1510915933:3548..3686 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1491911889:4749..5047 | TCONS_00044131-exon-sc0005031-1491911889:4749..5047 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1491911889:4157..4390 | TCONS_00044131-exon-sc0005031-1491911889:4157..4390 | Clytia hemisphaerica | exon |
| TCONS_00044131-exon-sc0005031-1491911889:3548..3686 | TCONS_00044131-exon-sc0005031-1491911889:3548..3686 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0005031 | supercontig | sc0005031:3548..5047 - |
Blast
The following BLAST results are available for this feature:
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